Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30320
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1296 + 32437089-32437386,32437422-32437429                       28   5.1  
01_07_0039 - 40667598-40669880                                         28   5.1  
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101...    27   8.9  

>04_04_1296 + 32437089-32437386,32437422-32437429
          Length = 101

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -2

Query: 323 RSAIKMDPY*TIKTPEKFTRHSTTWHSA*HVSIHTGP 213
           RSA+  DP   +KT      HSTTW  A   S+  GP
Sbjct: 4   RSAVYFDP--KVKTHTSLAHHSTTWVVA---SVRLGP 35


>01_07_0039 - 40667598-40669880
          Length = 760

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 261 LHNLAQCVTR*HTYRTDRDITTCFEL*IRLKPETLQMHRTARS 133
           +HNL     R  ++R   D+ T FEL     PE LQ   T+ S
Sbjct: 458 IHNLLMFSHRIPSFRFTCDVGTVFELEHSAVPENLQYENTSAS 500


>03_02_1012 +
           13207907-13207990,13209196-13209280,13209402-13210186,
           13210262-13210462,13210580-13210690,13211105-13211487,
           13211594-13211702,13211786-13211866,13212088-13212156,
           13212379-13212467,13212619-13212780,13212859-13212916,
           13213143-13213373,13213516-13213662,13213779-13214333,
           13214562-13214819,13215096-13215203,13215760-13215854,
           13215946-13216102,13216466-13216666,13217542-13217670,
           13218292-13218567
          Length = 1457

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 456 RSLKFSVMTILKLMRSRK-PTNIFLKKTIIFDSLVKENTYKLTSNQE 319
           R +KF V   LKLMRS    T    +  +IF   V +  Y+L   +E
Sbjct: 384 REVKFKVSRSLKLMRSAAIRTRRLARDMLIFWKRVDKEQYELRKREE 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,328,986
Number of Sequences: 37544
Number of extensions: 201878
Number of successful extensions: 428
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)