Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30320
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 29   3.0  
SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)                   28   5.3  
SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              27   6.9  
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)       27   9.2  

>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -3

Query: 256 QPGTVRDTLA-YIPDRSRYN----DLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPE 92
           QP   R+ L   +PDR  Y+    D+FRT + +K    S     +    D    +TSL +
Sbjct: 222 QPKDAREQLTTQLPDRVNYDAYDADIFRTTSNVKPLTDSILRQGSHSMPDVIPKVTSLTD 281

Query: 91  IRNL 80
           I  L
Sbjct: 282 IERL 285


>SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)
          Length = 598

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +3

Query: 150 ASEVFRALSGFKVRNRSLYRDRSGMYANVSRTVP 251
           +S VF A  GF+ +N ++++D SG+  +V+ +VP
Sbjct: 66  SSVVFHA--GFEQKNHNVFKDDSGLLNDVTLSVP 97


>SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 412

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 444 FSVMTILKLMRSRKPTNIFLKKTIIFDSLV 355
           F V TI K+ R + PTN+      +FD +V
Sbjct: 56  FVVRTIFKVPRMKTPTNMMFVNMALFDIIV 85


>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
          Length = 893

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 460 LTESKVFGDDDIEVNEVKKTDKYLFKKN 377
           LTE  V GD    V   K  D YLFK+N
Sbjct: 100 LTEEDVLGDVASNVATHKARDVYLFKRN 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,012,006
Number of Sequences: 59808
Number of extensions: 270161
Number of successful extensions: 571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)