Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30320
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.5  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   7.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   10.0 

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 75  CHRFLISGNDVKVVVASLYPTALSDASEVFRALSG--FKVRNRSLYRDRSGMYANVSRTV 248
           C + +I+G  V    A  YP     A+ V  A+    F + +R ++R     Y N+  T 
Sbjct: 312 CVQAMIAGIVVISAGADAYPPL---AAIVLGAIGSIVFYIISRYVFRSALEDYCNIVATH 368

Query: 249 PGCGVSGELFWSF 287
             CG+ G +   F
Sbjct: 369 LVCGILGSILVPF 381


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 17  EKKKTKNSLNP 49
           EKKKTK SL+P
Sbjct: 540 EKKKTKQSLSP 550


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = -1

Query: 426 LKLMRSRKPTNIFLKKTIIFDSLVKENTYKLTSNQECY*NGSVLNY*NSRKVHPTLHNLA 247
           LK + S  PT    + T   D     NT +L   Q    NG V+++ N    H     L 
Sbjct: 413 LKCVASGNPTP---EITWELDGKRLSNTERLQVGQYVTVNGDVVSHLNISSTHTNDGGLY 469

Query: 246 QCV 238
           +C+
Sbjct: 470 KCI 472


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 177 GFKVRNRSLYRDRSGMYANVSRTVPGCGVS 266
           GF V+N S+   R G  A  S+  P  G +
Sbjct: 309 GFNVKNISVKELRRGYVAGDSKNQPPRGAA 338


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 177 GFKVRNRSLYRDRSGMYANVSRTVPGCGVS 266
           GF V+N S+   R G  A  S+  P  G +
Sbjct: 20  GFNVKNISVKELRRGYVAGDSKNQPPRGAA 49


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 177 GFKVRNRSLYRDRSGMYANVSRTVPGCGVS 266
           GF V+N S+   R G  A  S+  P  G +
Sbjct: 309 GFNVKNVSVKELRRGYVAGDSKNNPPKGAA 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,293
Number of Sequences: 438
Number of extensions: 2441
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)