Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30319
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 30 0.18
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 28 0.72
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 27 1.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 26 3.8
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 3.8
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 5.1
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 5.1
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 5.1
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 6.7
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 25 8.9
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 8.9
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 25 8.9
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 8.9
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 25 8.9
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 25 8.9
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.3 bits (65), Expect = 0.18
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 118 TLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVS 231
TLP +T +T R + PPS SNR + + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 0.72
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 150 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 287
N+ S+ + Q + + IY PD Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 1.3
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -2
Query: 158 LFVLQAVEYFPGKVLLQQRLRVGSLELAETSLQFLEG--CGVDHC 30
LFV+ VEY PG L LR GS +T+ +FL CG+++C
Sbjct: 83 LFVV--VEYMPGGELFDCMLRKGSFTEQDTA-KFLWQILCGLEYC 124
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 148 RTKRPHSDPPSLTASNRVSRTWTPASVS 231
R RP +PP L+ASN T P++ S
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPPSNGS 418
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 3.8
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 282 IIEDYHNGFKKTDKHPPKNW 341
I++ ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -3
Query: 163 EVFLFFRLSNTSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFLAL 11
E + F RL T +F S + E L AS S+VAA I AAF+ L
Sbjct: 518 EKYDFNRLLAT-FAMHFSSEEDEIQQTKKLNRASVISKVAALIITAAFIIL 567
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 363 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 485
N+D A EF++ T S++G N C+ + YK DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 133 TSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFL 17
+SLV++ ++ +LKP + F V A VA FL
Sbjct: 384 SSLVKWLTKRKIKMASEGILKPLNEFQAVVARDSVAKFL 422
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 413 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQP 505
P+ VP P P VPV + GQ L PV P
Sbjct: 671 PVVPEVPSVPQPPAVPVVPEAGQ-LNEPVVP 700
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 327 PPKNWGDV 350
PPKNWGDV
Sbjct: 521 PPKNWGDV 528
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 287 DDRVKQLGEHGVRLGVRRVDTDAGVQVLDTRLDAVKEGGS 168
+D K + ++ GV G+ L + LDA++ GG+
Sbjct: 193 EDLTKVVADYTNGKGVDAAYDSVGIDTLSSSLDALRNGGT 232
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 229 IPTPESKFSTPDWMQSR 179
I P ++F PDW+Q R
Sbjct: 1152 ISNPVTRFPLPDWLQKR 1168
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 279 PIIEDYHNGFKKTDKHPPKNWGDVDTLGNL 368
P+++D +NGF KH + V TL NL
Sbjct: 423 PLVDDIYNGFDVDKKHQSSS---VPTLPNL 449
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 24.6 bits (51), Expect = 8.9
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +3
Query: 12 SARKAATMVDAATLEKLEAGFSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCI 191
S RK EKLE+ + L+ K R++ DS+K KT ++
Sbjct: 361 SLRKETDTTSVERREKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTELEQARIELE 420
Query: 192 QSGVENLDSGVGIYAPDAE-SYSVFAEL 272
++ E G YA +E Y++ EL
Sbjct: 421 RTQRE------GNYARASELQYAIIPEL 442
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 24.6 bits (51), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 130 SLVRYFFSSDLESDPWSLLK-PASNFSRVAASTIVAAFLALEQP 2
S++R F D++ P P+S S +A ST+ A L +QP
Sbjct: 188 SIIRSF--PDIQKQPKGFFSYPSSTVSSIAPSTLEAGNLHSQQP 229
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -2
Query: 359 ERVHVSPVLGRVLVGLLEAIVVVLDDRVKQLGEHGVRLGVRRVDTDAGVQV 207
E+ ++P+LG + G ++ ++ +Q+ HG V +AG+ V
Sbjct: 107 EKKPLNPILGELFYGSWDSSKGKVELTAEQVSHHGPESAAHVVCKEAGITV 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,456
Number of Sequences: 5004
Number of extensions: 39232
Number of successful extensions: 187
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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