Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30319
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    31   0.35 
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    31   0.35 
At1g18420.1 68414.m02300 expressed protein contains Pfam profile...    30   1.1  
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ...    28   3.2  
At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondria...    28   4.3  
At1g24706.1 68414.m03104 expressed protein                             28   4.3  
At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containi...    27   7.5  
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    27   7.5  
At1g10410.1 68414.m01173 expressed protein similar to ESTs gb|N9...    27   7.5  
At2g25600.1 68415.m03066 potassium channel protein, putative sim...    27   9.9  

>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = +1

Query: 19  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTASNR 198
           E   ++ +P P++N R  S S   PT+S   +S +  K + +   KRP S PPS T+ + 
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPST 88

Query: 199 VSRTWT---PASVSTRRTPSRTP 258
             R  +   PAS S R +  R P
Sbjct: 89  PIRDLSIDLPAS-SRRLSTGRLP 110


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = +1

Query: 19  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTASNR 198
           E   ++ +P P++N R  S S   PT+S   +S +  K + +   KRP S PPS T+ + 
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPST 88

Query: 199 VSRTWT---PASVSTRRTPSRTP 258
             R  +   PAS S R +  R P
Sbjct: 89  PIRDLSIDLPAS-SRRLSTGRLP 110


>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 581

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 297 HNGFKKTDKHPPKNWGDVDTLGNLDPA 377
           H    +    PPKNW DV T  NL  A
Sbjct: 470 HKSQSEATLRPPKNWDDVTTAANLSSA 496


>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
           contains Pfam domain, PF01207: Dihydrouridine synthase
           (Dus)
          Length = 700

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 327 PPKNWG--DVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMED 479
           PP  +G  D++TL   + AG++V  + +  G+  EG+ F P    + Y   E+
Sbjct: 647 PPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHKSNAYDRAEN 699


>At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondrial
           identical to SP|Q96252 ATP synthase delta' chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile PF02823: ATP synthase,
           Delta/Epsilon chain, beta-sandwich domain
          Length = 203

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 115 STLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVSTRRT 243
           STL   +  A +   P+ DPP   ++    R  TP+S+ T+ T
Sbjct: 32  STLDSTFVEAWKKVAPNMDPPQTPSAFMKPRPSTPSSIPTKLT 74


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 508  SRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAG 371
            +RLD         S + D  R   KGY   +R  R RV+ ++ P G
Sbjct: 1464 ARLDLNKTVTDDQSTHRDQDRSKDKGYERQDRDHRERVDRSDKPRG 1509


>At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 613

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 111 KKYLTREVFDSLKNKKT-SFGSTLLDCIQSGV 203
           +KY  R+VFD + ++ T S+ S +  C Q G+
Sbjct: 97  RKYAVRKVFDEMLHRDTVSYCSIINSCCQDGL 128


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 84  QGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENLDSGVGI 230
           +GSD  SL    ++    D+   K T+FGS+ LD ++  +   DSG+ +
Sbjct: 263 KGSDLTSLSAPAISNGGRDAASLKTTNFGSSALDLVKKKLH--DSGMPV 309


>At1g10410.1 68414.m01173 expressed protein similar to ESTs
           gb|N96021 and gb|N96863
          Length = 485

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 163 HSDPPSLTASNRVSRTWTPASVSTRRTPSRTPCSPS 270
           H D  SL  S RVS + T  + STR T S    S S
Sbjct: 88  HEDALSLNGSERVSLSSTTTTSSTRDTDSNEVMSQS 123


>At2g25600.1 68415.m03066 potassium channel protein, putative
           similar to potassium channel [Lycopersicon esculentum]
           GI:8980432; member of the 1 pore, 6 transmembrane
           (1P/6TM- Shaker-type) K+ channel family, PMID:11500563;
           Shaker Pollen Inward K+ Channel (SPIK) PMID:11825875
          Length = 888

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 320 VGLLEAIVVVLDDRVKQLGEHGVRLGVRRVDTDAGVQVLDTRLDAVKE 177
           V L EAI+    +  K L E+G +L +  V   +G+ V    LDA+K+
Sbjct: 612 VPLWEAIIGRHREIAKLLAENGAKLSLDSVSYFSGLAVEKNCLDALKD 659


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,426,847
Number of Sequences: 28952
Number of extensions: 220156
Number of successful extensions: 923
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)