Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30318
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          26   2.9  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   3.8  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   5.1  

>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 481 KLSYLLHTCSLAEWFAPPSDIYKVFYFQHLIHK 383
           ++ +LLH  S ++ F  P D  +   F+  IHK
Sbjct: 35  RMIFLLHQTSSSDGFPLPKDFDRTSIFEKKIHK 67


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 101 DEHTAYLMVNGYLRSSTSALPLVKLSRSLPIEIYALPIY 217
           D++    ++N Y+ ++ S L L++ S+SL   +Y+L  Y
Sbjct: 395 DDNFTLNIMNAYVYANESLLQLLQSSQSLYAHLYSLKHY 433


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 397 VGSRKLCIYPMVEQTIRPTSMYAINSLV*HY 489
           V  R L +YP++EQT +     +++ +  HY
Sbjct: 291 VPKRLLKVYPLIEQTAKRLHRISLSKVYNHY 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,059
Number of Sequences: 5004
Number of extensions: 33171
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)