Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30318
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1353 + 35866130-35866297,35866438-35868762                       33   0.14 
07_01_0156 + 1106058-1107596                                           28   3.9  
06_03_0259 - 18851809-18852561,18852659-18852895                       28   5.1  
09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112...    27   6.8  

>02_05_1353 + 35866130-35866297,35866438-35868762
          Length = 830

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 43  SAFNIYSVELDLFVVTIVGRRAHGLPDGKWLPSFIDISTAISKA 174
           +AF      L +F + +VG  A+G PDG+  PSF D+S  +S A
Sbjct: 193 AAFANDMASLSVFSIMVVGTTAYG-PDGQPTPSFPDMSIVMSMA 235


>07_01_0156 + 1106058-1107596
          Length = 512

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 266 TKVYIIIYYYALIRDDCRLVTRKFQWAASG 177
           TK  +   +Y+ I   CR   R+F+W A G
Sbjct: 110 TKSLVSSLFYSNIDGSCRSAVRRFEWFADG 139


>06_03_0259 - 18851809-18852561,18852659-18852895
          Length = 329

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 182 SGLALLMAVLMSMNEGNHLPSGRPCA 105
           + L+LL+AVL S  EG+H P   P A
Sbjct: 10  ASLSLLLAVLASTGEGSHQPVVMPVA 35


>09_03_0130 -
           12609417-12610462,12610786-12611040,12611139-12611253,
           12611376-12611428,12611854-12612114,12612252-12612302,
           12612412-12612660,12612779-12613007,12613292-12613666
          Length = 877

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 266 TKVYIIIYYYALIRDDCRLVT 204
           TK +II Y+YA +R +CR  T
Sbjct: 838 TKKFIINYFYAFLRRNCRAGT 858


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,644,154
Number of Sequences: 37544
Number of extensions: 196298
Number of successful extensions: 412
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)