Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30318
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63590.1 68414.m07188 receptor-like protein kinase-related co...    29   1.4  
At3g55930.1 68416.m06215 RNA splicing factor-related similar to ...    27   5.7  
At4g23380.1 68417.m03371 hypothetical protein predicted proteins...    27   7.5  
At5g56000.1 68418.m06988 heat shock protein 81-4 (HSP81-4) nearl...    27   9.9  
At1g02630.1 68414.m00213 equilibrative nucleoside transporter, p...    27   9.9  

>At1g63590.1 68414.m07188 receptor-like protein kinase-related
           contains Pfam PF01657: Domain of unknown function;
           similar to receptor-like protein kinase 4 (GI:13506745)
           {Arabidopsis thaliana}
          Length = 268

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 198 FTRYQSTIITNECIIIYNNINF 263
           F R  + +I+NECI+ Y+N++F
Sbjct: 108 FYRKSALVISNECIVRYSNVSF 129


>At3g55930.1 68416.m06215 RNA splicing factor-related similar to
           U4/U6-associated RNA splicing factor [Homo sapiens]
           GI:2853287
          Length = 437

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 463 HTCSLAEWFAPPSDIYKVFYFQHLIHKLT**FVMRV 356
           +TCS+A        I  V  FQ L HK T  FV+RV
Sbjct: 65  YTCSIASETTSGQIIVAVKRFQDLAHKQTKGFVLRV 100


>At4g23380.1 68417.m03371 hypothetical protein predicted proteins,
           Arabidopsis thaliana
          Length = 400

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 31  LYDLSAFNIYSVELDLFVVTIVGRRAHGLPDGKWLPSFIDISTAISKAKPLAA 189
           L  +S +N    E+DL +  +V  R  G+  G W P  + I++ + K   LA+
Sbjct: 263 LQPISVYNGTQKEMDLSLHQVVTSRVSGVNVGYW-PQSLFIASGLVKGADLAS 314


>At5g56000.1 68418.m06988 heat shock protein 81-4 (HSP81-4) nearly
           identical to heat shock protein hsp81.4 [Arabidopsis
           thaliana] GI:1906828; contains Pfam profiles PF02518:
           ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
           domain protein, PF00183: Hsp90 protein
          Length = 699

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 305 YETVKVVVEAKGGTKVYIIIYYYALIRDDCRLVTRKFQWAASGLALLMA-VLMSMNEGNH 129
           +E +  V++   G KV  +I    ++   C LVT ++ W A+   ++ A  L   N G +
Sbjct: 539 FEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALKDSNTGGY 598

Query: 128 LPS 120
           + S
Sbjct: 599 MSS 601


>At1g02630.1 68414.m00213 equilibrative nucleoside transporter,
           putative (ENT8) identical to putative equilibrative
           nucleoside transporter ENT8 [Arabidopsis thaliana]
           GI:28207664; contains similarity to SWISS-PROT:O54699
           equilibrative nucleoside transporter 2 (Equilibrative
           nitrobenzylmercaptopurine riboside-insensitive
           nucleoside transporter, Equilibrative NBMPR-insensitive
           nucleoside transporter, Nucleoside transporter, ei-type)
           [Rattus norvegicus]; contains Pfam profile PF01733:
           Nucleoside transporter
          Length = 389

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 212 LVTRKFQWAASGLALLMAVLMSMNEG 135
           +V RK +W ASG+ ++ +V +S+  G
Sbjct: 231 MVGRKIKWPASGMLIIYSVTLSIFPG 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,511,460
Number of Sequences: 28952
Number of extensions: 162403
Number of successful extensions: 307
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)