BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV30316 (516 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 3e-17 SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98 SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 30 0.98 SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) 30 0.98 SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3 SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 30 1.3 SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) 29 1.7 SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 29 1.7 SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 29 1.7 SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28) 29 1.7 SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3 SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3 SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) 29 3.0 SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 29 3.0 SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 29 3.0 SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0 SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) 28 4.0 SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3 SB_41598| Best HMM Match : HLH (HMM E-Value=2.2) 28 5.3 SB_34777| Best HMM Match : VWA (HMM E-Value=0) 28 5.3 SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3 SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13) 27 6.9 SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 SB_37815| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 SB_19802| Best HMM Match : fn3 (HMM E-Value=0) 27 9.2 SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 SB_10060| Best HMM Match : SAP (HMM E-Value=0.016) 27 9.2 >SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 744 Score = 85.0 bits (201), Expect = 3e-17 Identities = 50/96 (52%), Positives = 58/96 (60%), Gaps = 1/96 (1%) Frame = +1 Query: 100 SALVRPLAAVPTHTQMVPAVPTQLS-AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXX 276 +A +RP + +VPA P + A R FQT+S +D+DSAAKF Sbjct: 61 TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSG 119 Query: 277 XXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSE 384 FGSLIIGYARNPSLKQQLFSYAILGFALSE Sbjct: 120 AGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155 >SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1850 Score = 30.3 bits (65), Expect = 0.98 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Frame = -1 Query: 366 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 205 QNG + E++L++ G + G + ++T S T + H CT ++ + L Sbjct: 1728 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 1787 Query: 204 DRCGLEGPHCRELCRDS 154 C + +CR +C D+ Sbjct: 1788 INCPKKCKYCRPVCEDT 1804 >SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) Length = 2681 Score = 30.3 bits (65), Expect = 0.98 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Frame = -1 Query: 366 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 205 QNG + E++L++ G + G + ++T S T + H CT ++ + L Sbjct: 52 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 111 Query: 204 DRCGLEGPHCRELCRDS 154 C + +CR +C D+ Sbjct: 112 INCPKKCKYCRPVCEDT 128 >SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) Length = 565 Score = 30.3 bits (65), Expect = 0.98 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -1 Query: 234 EFGSRVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 130 E R NVLSD GLE CR LC + + C G Sbjct: 76 EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111 >SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1315 Score = 29.9 bits (64), Expect = 1.3 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 15/84 (17%) Frame = -1 Query: 261 SHCRCTSTN---EFGSRVNVL-----SDRC--GLEGPHCRELCRDSRYHLCMGGYCCKWS 112 ++C+C S+ E G ++V+ +D C + C C Y C+ G C KW Sbjct: 1151 ANCKCLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEYQ-CVSGACVKWP 1209 Query: 111 HQC---RVAEDG--RPGCRGDQSG 55 C + EDG PG G Q G Sbjct: 1210 LTCDGKKDCEDGTDEPGICGVQIG 1233 >SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) Length = 960 Score = 29.9 bits (64), Expect = 1.3 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 12/104 (11%) Frame = -1 Query: 324 PGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRC----------GLEGPH 178 PG ++ C + G + +H C CT+ G+R N ++ +C G GP Sbjct: 346 PGWTGPFCSKPCPPSLWGHNCAHPCNCTN----GARCNAVTGQCACTDGCSCNAGWTGPE 401 Query: 177 CRELC-RDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSGGR 49 CR+ C DS C C + +C A GR C +G R Sbjct: 402 CRDPCGLDSWGPGCTNTCQCSRNGECDAA-SGRCACAPGFTGDR 444 >SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) Length = 802 Score = 29.5 bits (63), Expect = 1.7 Identities = 20/80 (25%), Positives = 31/80 (38%) Frame = -1 Query: 303 GAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYC 124 G D + G+ CR ++ + + C C +LCRD+ GGY Sbjct: 278 GCRDLCINTPGSFMCQCRQGYVLANDNKTCINLNECATRKHRCEQLCRDTD-----GGYY 332 Query: 123 CKWSHQCRVAEDGRPGCRGD 64 C+ +V DG C G+ Sbjct: 333 CECHKGYQVGPDGM-SCIGN 351 >SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) Length = 147 Score = 29.5 bits (63), Expect = 1.7 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Frame = -1 Query: 435 ESEEQQERH-HKTEQTHSLRQGETQNG--V*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 265 ES Q H H + H Q + NG V ++L +G + D +C+ S+ Sbjct: 23 ESCHMQPLHAHPSHSCHG-DQFQCLNGMCVGQELRCDGDYACV-DHSDERNCACRSAEFK 80 Query: 264 YSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDG 85 +C ++F + + +D G + C C S H C G C WS C D Sbjct: 81 CPDGKCVHPSKFCNGESDCTD--GSDEWSCDNSC--SSRHACADGTCVTWSLTCNGVSDC 136 Query: 84 RPG 76 + G Sbjct: 137 QDG 139 Score = 28.7 bits (61), Expect = 3.0 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 Query: 117 TCSSTHPYTDGTCCPYTALCSAV 185 +CSS H DGTC ++ C+ V Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133 >SB_20479| Best HMM Match : Collagen (HMM E-Value=1) Length = 1214 Score = 29.5 bits (63), Expect = 1.7 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -1 Query: 465 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 358 +V LK ESEE E H EQ H +Q +T NG Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242 >SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28) Length = 859 Score = 29.5 bits (63), Expect = 1.7 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%) Frame = -1 Query: 450 KVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSS- 274 K++ L+ E Q H + + +L +N V + +G +EGAE SS Sbjct: 204 KIDELDEIESQTSEHASNEMQNL---SFENNV--WTVTDGDKEQETGEEGAEPTPGESSP 258 Query: 273 --GTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCREL 166 GT+ + +++ + N LS++C + HC EL Sbjct: 259 GAGTAPNALPNADSSKKLAEFNELSEKCRIMRVHCLEL 296 >SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 5834 Score = 29.1 bits (62), Expect = 2.3 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = -1 Query: 195 GLEGPHCRELCRDSRYHLCMG-GYCCKWSHQC 103 G G C +LC+ +++C G G C +W+ C Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423 >SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 917 Score = 29.1 bits (62), Expect = 2.3 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = -1 Query: 195 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 46 G + P E CR + C C +++HQC E+G P S GR+ Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414 >SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) Length = 186 Score = 28.7 bits (61), Expect = 3.0 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 104 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 217 HW + + PI RW+ L H+SL P+RP+R+ + + Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165 >SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) Length = 718 Score = 28.7 bits (61), Expect = 3.0 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = +3 Query: 36 KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPD 194 ++ VC TD+PC + H ++ C T +T P T C T S +PD Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538 >SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) Length = 351 Score = 28.7 bits (61), Expect = 3.0 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 Query: 117 TCSSTHPYTDGTCCPYTALCSAV 185 +CSS H DGTC ++ C+ V Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133 Score = 28.3 bits (60), Expect = 4.0 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Frame = -1 Query: 435 ESEEQQERH-HKTEQTHSLRQGETQNG--V*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 265 ES Q H H + H Q + NG V +++ +G + D +C+ S+ Sbjct: 23 ESCHMQPLHAHPSHSCHG-DQFQCLNGMCVGQEVRCDGDYACV-DHSDERNCACRSAEFK 80 Query: 264 YSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDG 85 +C ++F + + +D G + C C S H C G C WS C D Sbjct: 81 CPDGKCVHPSKFCNGESDCTD--GSDEWSCDNSC--SSRHACADGTCVTWSLTCNGVSDC 136 Query: 84 RPG 76 + G Sbjct: 137 QDG 139 >SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 564 Score = 28.7 bits (61), Expect = 3.0 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = -1 Query: 243 STNEFGSRVNVLS-DRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRG 67 ST E +R+ ++S D+C + CR+ C+ S + MG C + + + ++A P C G Sbjct: 8 STQEKLTRIAIVSTDKC--KPKRCRQECKKSCPVVRMGKLCIEVTPETKLAAISEPLCIG 65 >SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) Length = 201 Score = 28.3 bits (60), Expect = 4.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -1 Query: 174 RELCRDSRYHLCMGGYCCKWSHQCR 100 R CR HLC+G C+W Q R Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197 >SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 296 Score = 27.9 bits (59), Expect = 5.3 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%) Frame = +3 Query: 258 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 338 G +WF SW W + LPH+ + C E LP+ Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294 >SB_41598| Best HMM Match : HLH (HMM E-Value=2.2) Length = 519 Score = 27.9 bits (59), Expect = 5.3 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 252 RCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRY 148 R T T +FG +VN+ S LEG R+ D+ + Sbjct: 16 RATFTKDFGCQVNICSASASLEGEIQRQRNTDTNF 50 >SB_34777| Best HMM Match : VWA (HMM E-Value=0) Length = 1268 Score = 27.9 bits (59), Expect = 5.3 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = -1 Query: 435 ESEEQQERHHKTEQTHSLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 295 + + QER +TEQTH QG+ Q +Q ++G G + D+G E Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686 >SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 617 Score = 27.9 bits (59), Expect = 5.3 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 453 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 361 LK E E+QQ +HHK E+ Q E Q+ Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456 >SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13) Length = 479 Score = 27.5 bits (58), Expect = 6.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +1 Query: 91 FCNSALVRPLAAVPTHTQMVPAVPTQLSAVRSF 189 +CN+ L R +VP T +VP T L V S+ Sbjct: 441 YCNNGLKRDGVSVPAFTTLVPEPRTSLYLVASW 473 >SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1487 Score = 27.1 bits (57), Expect = 9.2 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 4/91 (4%) Frame = -1 Query: 324 PGIADDEGAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRE----LCRD 157 P + D++G C N S+G HC F + +C G C E C + Sbjct: 355 PLVIDEDGECLCGNFSTGLLCKHC---VPGHFFLQGYCSRCQCNGHGSICDERGKCSCEN 411 Query: 156 SRYHLCMGGYCCKWSHQCRVAEDGRPGCRGD 64 + C G + +QC DG G D Sbjct: 412 NTAEQCHSGQNDCYKNQCTKCVDGFLGSPAD 442 >SB_37815| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 140 Score = 27.1 bits (57), Expect = 9.2 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%) Frame = +2 Query: 23 PHLIKTKCC---LP--PD*SPLQPGLPSSATLH-WCDHLQQYPPIHRWY 151 P L+ T CC +P P S PG+P + H WC + + PP+ WY Sbjct: 52 PPLV-TLCCRKAIPGNPVLSEAIPGVPVLSESHPWCPCVVRKPPLLYWY 99 >SB_19802| Best HMM Match : fn3 (HMM E-Value=0) Length = 1075 Score = 27.1 bits (57), Expect = 9.2 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = +3 Query: 126 STHPYTDGTCCPYTALC 176 STHP D TCC LC Sbjct: 964 STHPAEDPTCCRLRTLC 980 >SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 248 Score = 27.1 bits (57), Expect = 9.2 Identities = 29/78 (37%), Positives = 30/78 (38%), Gaps = 12/78 (15%) Frame = +3 Query: 57 QTD-RPCSQVCHLLQLCTGATTCSSTHPYTD----GTC---CPYTALC--SAVLPDHIGH 206 QTD CSQ CH L C G TC+ G C C T LC S V H Sbjct: 54 QTDFSSCSQSCHFLHSCPG-MTCTGRDVCDQKCFFGKCDMSCHATDLCSQSCVWESHC-- 110 Query: 207 *GH*LCCQIHWCW--CSD 254 H L C C CSD Sbjct: 111 --HALTCTARICHQICSD 126 >SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 720 Score = 27.1 bits (57), Expect = 9.2 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Frame = -1 Query: 231 FGSRVNVLSDRCGLEGPHCRE-----LCRDSRYHLCMGGYCCKWSHQ-CRVAEDGRPGC 73 +GS + C L+ C L R H C G C + C+V +DG+P C Sbjct: 159 YGSDGKNYDNECELKRAACTSNRRIILAGRGRVHPCAGFSCDSPPYSTCKVQDDGKPAC 217 >SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1387 Score = 27.1 bits (57), Expect = 9.2 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -1 Query: 486 NLICRMAVVVFLKVNSLESEEQQER-HHKTEQT-HSLRQGETQNGV 355 NLI ++VV+ + LE ++ R HHKT+ + H R+ E G+ Sbjct: 5 NLITILSVVLATQTLGLEGRKRHHRHHHKTKHSPHHKRRLEKSKGL 50 >SB_10060| Best HMM Match : SAP (HMM E-Value=0.016) Length = 332 Score = 27.1 bits (57), Expect = 9.2 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%) Frame = -1 Query: 180 HCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPG--CRGDQSGGRQ 46 HC +C D C + H C+ D P CR S G++ Sbjct: 272 HCNNVCFDFNRVTGCSRQACIYPHVCQKCADSHPAHQCRAGISAGQR 318 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,210,944 Number of Sequences: 59808 Number of extensions: 387953 Number of successful extensions: 1446 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1260 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1440 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1148326654 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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