Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30316
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su... 44 8e-05
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR... 28 4.3
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 4.3
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 28 4.3
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 27 5.7
At5g11040.1 68418.m01290 expressed protein weak similarity to hy... 27 7.5
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 27 7.5
At3g48380.2 68416.m05281 expressed protein 27 7.5
At3g48380.1 68416.m05280 expressed protein 27 7.5
At3g18215.1 68416.m02317 expressed protein contains Pfam profile... 27 7.5
At5g41460.1 68418.m05035 fringe-related protein strong similarit... 27 9.9
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r... 27 9.9
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r... 27 9.9
At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2) iden... 27 9.9
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 27 9.9
At4g26530.1 68417.m03822 fructose-bisphosphate aldolase, putativ... 27 9.9
At3g61290.1 68416.m06859 hypothetical protein 27 9.9
At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 ... 27 9.9
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 27 9.9
At3g13050.1 68416.m01626 transporter-related low similarity to a... 27 9.9
>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
subunit family protein similar to ATPase subunit 9
[Arabidopsis thaliana] GI:15215920; contains Pfam
profile PF00137: ATP synthase subunit C
Length = 85
Score = 43.6 bits (98), Expect = 8e-05
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +1
Query: 295 FGSLIIGYARNPSLKQQLFSYAILGFALSE 384
F SLI ARNPSL +Q F YAILGFAL+E
Sbjct: 39 FSSLIHSVARNPSLAKQSFGYAILGFALTE 68
>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1095
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 29 LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 139
L++ CC + P LPS LH +C LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 233 NLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTS 105
N+A+E + L+ ++ CV +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 188 SRPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAM 319
SRPH ++ +TLLP+ + R+WE ++ ++ S + SA+
Sbjct: 37 SRPHDPIK-ITLLPDGIEKEGRRWETSPMDIAVQISKGLAKSAL 79
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 321 GIADDEGAEDCSNTSSGTSYSHCRCTSTNEFG 226
GI DD+G ++ + S + R T+EFG
Sbjct: 660 GIVDDDGGKESKDKESKDRFKDIRIERTDEFG 691
>At5g11040.1 68418.m01290 expressed protein weak similarity to
hypercellular protein [Aspergillus nidulans] GI:9309269
Length = 1186
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 216 NVLSDRCGLEGPHCRELCRDSRYHLCMGG 130
NVL R G P+ CR +H+C+ G
Sbjct: 1155 NVLRARAGTASPNEPIFCRGPPFHVCVAG 1183
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 312 DDEGAEDCSNTSSGTSYS-HCRCTSTNEFGSRVNVLSD 202
DDE ++D + SS T YS C + ++ G+ ++ D
Sbjct: 1108 DDESSDDDDDLSSETDYSDECEDSDDSDLGNEIDYSED 1145
>At3g48380.2 68416.m05281 expressed protein
Length = 640
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 264 SWFRSWYWNSLRLPHHRLCQEPL 332
SWFR ++ S+ +P HR Q+ L
Sbjct: 477 SWFRLQHYTSISVPSHREIQQTL 499
>At3g48380.1 68416.m05280 expressed protein
Length = 645
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 264 SWFRSWYWNSLRLPHHRLCQEPL 332
SWFR ++ S+ +P HR Q+ L
Sbjct: 482 SWFRLQHYTSISVPSHREIQQTL 504
>At3g18215.1 68416.m02317 expressed protein contains Pfam profile
PF04654: Protein of unknown function, DUF599
Length = 244
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 362 FWVSPCLRLWVCSVL*WRSCCSSLSKLFTFKNTTTAIL-HMRFQCILSGVDS 514
F+ S L LW + CC +S + F +TTT+ H+ Q DS
Sbjct: 181 FYFSFPLFLWTFGPIPMFVCCCMMSSILYFLDTTTSFTRHLHSQSFRETADS 232
>At5g41460.1 68418.m05035 fringe-related protein strong similarity
to unknown protein (pir||T13026) similarity to predicted
proteins + similar to hypothetical protein GB:AAC23643
[Arabidopsis thaliana] + weak similarity to Fringe
[Schistocerca gregaria](GI:6573138);Fringe encodes an
extracellular protein that regulates Notch signalling.
Length = 524
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 281 VLEQSSAPSSSAMPGTPPXXXXXXHTPFWVSPCLRLW 391
V++ ++P S P PP H F ++ RLW
Sbjct: 90 VIKSYASPPPSPPPPPPPPQTGFQHVVFGIAASARLW 126
>At5g35210.2 68418.m04175 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1409
Score = 26.6 bits (56), Expect = 9.9
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -1
Query: 123 CKWSHQCRVAEDGRPGC 73
C W H CR+ R GC
Sbjct: 724 CGWCHSCRLTSASRRGC 740
>At5g35210.1 68418.m04174 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1576
Score = 26.6 bits (56), Expect = 9.9
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -1
Query: 123 CKWSHQCRVAEDGRPGC 73
C W H CR+ R GC
Sbjct: 724 CGWCHSCRLTSASRRGC 740
>At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2)
identical to ethylene-insensitive3-like2 (EIL2)
GI:2224929 from [Arabidopsis thaliana]
Length = 518
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 120 CSSTHPYTDGTCC--PYTALCSAVLPD 194
CSS P+T+G C +TALC + D
Sbjct: 16 CSSAPPFTEGHMCSDSHTALCDDLSSD 42
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = -1
Query: 156 SRYHLCMGGYCCKWSHQ---CRVAEDGRPGCRGDQSG 55
+RYH C G C + H CR P C G+ SG
Sbjct: 318 TRYHKC--GICGERGHNSRTCRKPTGVNPSCSGENSG 352
>At4g26530.1 68417.m03822 fructose-bisphosphate aldolase, putative
strong similarity to SP|P22197 Fructose-bisphosphate
aldolase, cytoplasmic isozyme (EC 4.1.2.13) {Arabidopsis
thaliana}
Length = 358
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 348 QLLLEGGV-PGIADDEGAEDCSNTSSGTS 265
+LL+E GV PGI D+G D + T+ T+
Sbjct: 91 ELLMENGVIPGIKVDKGVVDLAGTNGETT 119
>At3g61290.1 68416.m06859 hypothetical protein
Length = 455
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 157 QQVPSVYGWVLLQVVAPVQSCRRWQTWL-QGRSVWRQTAFCFYKVRRATTK 8
Q PS Y L +++ +++C + W+ Q VW +T + RA K
Sbjct: 24 QTCPSTYPSRLEPMISSLETCPDYFRWIQQDLKVWEETGITRETLERAKPK 74
>At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 /
alpha-SNAP1 (ASNAP1) identical to alpha-soluble NSF
attachment protein 1 (Alpha-SNAP1) (N-
ethylmaleimide-sensitive factor attachment protein,
alpha 1) (Swiss-Prot:Q9LXZ5) [Arabidopsis thaliana]
Length = 381
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 453 LKVNSLESE-EQQERHHKTEQTHSLRQGETQNGV*EQLLLEG 331
LKV S+ EQQ R KT+ HSL + GV LL G
Sbjct: 210 LKVAQYASQLEQQSRFMKTQARHSLNNKLLKYGVKGHLLTAG 251
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 207 SDRCGLEGPHCRELCRDSRY 148
+D+CG + P CR+L + RY
Sbjct: 752 ADKCGRKCPKCRQLIGNGRY 771
>At3g13050.1 68416.m01626 transporter-related low similarity to
apical organic cation transporter [Sus scrofa]
GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
{Rattus norvegicus}; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 500
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 444 NSLESEEQQERHHKTEQTHSLRQGETQNGV 355
+ LE+E ++ ++ TE TH L+ GE+ V
Sbjct: 236 SELETELEENKNIPTENTHLLKAGESGEAV 265
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,520,560
Number of Sequences: 28952
Number of extensions: 243458
Number of successful extensions: 795
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -