Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30309
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0557 - 15441039-15442730 31 0.55
01_06_1120 - 34645676-34645768,34645880-34645966,34646443-346465... 29 1.7
04_04_1191 + 31599067-31600194 29 2.9
05_05_0174 - 22960732-22960815,22960907-22961419,22961576-229620... 28 3.9
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 27 6.8
03_02_0291 + 7148768-7148853,7148966-7149170,7149823-7150238,715... 27 6.8
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 27 8.9
09_04_0291 + 16433097-16433942,16434708-16434851,16435226-164353... 27 8.9
>05_03_0557 - 15441039-15442730
Length = 563
Score = 31.1 bits (67), Expect = 0.55
Identities = 26/100 (26%), Positives = 45/100 (45%)
Frame = -3
Query: 454 TSTLSYRVLIPSKLLQGLTLAYKSNSFLRAKLSDL*PLPTGVIRGPFKPILLAFTESIAF 275
+ TL YR + + L+GL + S LR+KL+ P P + + LAF
Sbjct: 155 SGTLPYRTALAAVFLEGLIFLFISLVGLRSKLAKFIPKPVRISSSAGIGLFLAFI----- 209
Query: 274 WGIPNLPSGPLTAVTSTSSHSIGTLAASKIF*TATVISGP 155
G+ + L +S++ ++G AS+ A V++ P
Sbjct: 210 -GLQSSEGVGLVGFSSSTLVTLGACPASQRASVAPVVTFP 248
>01_06_1120 -
34645676-34645768,34645880-34645966,34646443-34646508,
34647126-34647215,34647317-34647397,34647598-34647675,
34647788-34647878,34647969-34648110,34648479-34648590
Length = 279
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -2
Query: 290 RVNRFLGNTEFAIWTPNSCNIHFLPFDRYFSCFEDFLNGDRDLGPNTMSRDERNLAHASA 111
+++ + +FA+ TP S + LP ++ SC G+ + P T + + +L H
Sbjct: 55 QISHNVARFKFALPTPTS--VLGLPIGQHISCRGQDATGEEVIKPYTPTTLDSDLGHFEL 112
Query: 110 VLSSAGSGRW-HNFPDYSCSHFKNFR 36
V+ GR H+F + + + +
Sbjct: 113 VIKMYPQGRMSHHFREMKVGDYMSVK 138
>04_04_1191 + 31599067-31600194
Length = 375
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 304 LLAFTESIAFWGIPNLPSGPLTAVTSTS 221
LL E + FWG+PNL S P + TS
Sbjct: 290 LLTSLERLNFWGLPNLLSLPANLASLTS 317
>05_05_0174 -
22960732-22960815,22960907-22961419,22961576-22962058,
22964191-22964673
Length = 520
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 294 NANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTL 437
+A +GL + P+G+G+ +L+ ++ F L + P SL G+ +L
Sbjct: 337 SALNVGLGVGAILPLGRGFMNLSSSVPDRFYLGGHSSPVCSLSGLSSL 384
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 212 DRYFSCFEDFLNGDRDLGPNTMSRDERNLAHASAVLSSAGSG 87
D++F CFE+ +N +LG + + ++ +A +S+ SG
Sbjct: 399 DQFFECFEELMNSQTNLGNSGIWDWTCSVFNAITFVSTLASG 440
>03_02_0291 +
7148768-7148853,7148966-7149170,7149823-7150238,
7150325-7150631,7150722-7151186
Length = 492
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Frame = +3
Query: 186 IFEAAKVPIEWE------EVDVTAVRGPDGKFGI-PQKAIDSVNANKI 308
I A V + WE EV++ V+ DG + + P+KA+D VN N I
Sbjct: 157 IITGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVDMVNENTI 204
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 27.1 bits (57), Expect = 8.9
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +3
Query: 66 IRKIVPATRAGA-AQYSTGVRKVTL---IPGHGIGPEITVA-VQKIFEAAKVPIE 215
+R I P RA A R VT+ P HGIG EI ++ V++ FE P+E
Sbjct: 278 LRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEESFEYLDAPVE 332
>09_04_0291 +
16433097-16433942,16434708-16434851,16435226-16435390,
16435551-16435562
Length = 388
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Frame = -3
Query: 484 SPSVFSLIVTT-STLSYRV----LIPSKLLQGLTLAYKSNSFLRAKL 359
+P++ S +VT+ TL Y L P+KLL+GL +YK+ L+ L
Sbjct: 257 APNLLSAMVTSLETLDYYYYALPLSPTKLLKGLPSSYKNLKRLKVHL 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,068,281
Number of Sequences: 37544
Number of extensions: 285202
Number of successful extensions: 901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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