Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30309
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   5e-12
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)                   29   2.3  
SB_29996| Best HMM Match : Bombolitin (HMM E-Value=4.4)                29   2.3  
SB_10370| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_1757| Best HMM Match : UPF0126 (HMM E-Value=1.3)                    29   2.3  
SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)          28   5.3  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29)              27   9.2  

>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 29/47 (61%), Positives = 37/47 (78%)
 Frame = +3

Query: 372 RKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIV 512
           + E DL+ANV  C+SL GIKT +DN+D+V IRE TEGEY+ +EHE V
Sbjct: 89  KTELDLFANVVHCRSLPGIKTRHDNIDIVIIREQTEGEYTSLEHESV 135



 Score = 32.7 bits (71), Expect = 0.18
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 117 GVRKVTLIPGHGIGPEITVAVQKIFE 194
           G   VTLIPG G+GPE+   V+++F+
Sbjct: 64  GRHTVTLIPGDGVGPELVNCVKQMFK 89


>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
          Length = 573

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/76 (23%), Positives = 38/76 (50%)
 Frame = -2

Query: 329 HQGTLQANFIGIYRVNRFLGNTEFAIWTPNSCNIHFLPFDRYFSCFEDFLNGDRDLGPNT 150
           H+G  +AN +G+Y++     +TE A  T + C + F P   YF      +  +R +  + 
Sbjct: 80  HRG--EANIVGMYKIKNVTKDTE-AKETLSGCYVVFPPSLNYFIAHGTCIEKNRAVNLDV 136

Query: 149 MSRDERNLAHASAVLS 102
           +   +R  A  +++++
Sbjct: 137 LCYCDRGFAMITSLIA 152


>SB_29996| Best HMM Match : Bombolitin (HMM E-Value=4.4)
          Length = 316

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 263 EFAIWTPNSCNIHFLPFDRY 204
           EF  W PNSC I F+ F ++
Sbjct: 21  EFDFWEPNSCRIRFVDFWKF 40


>SB_10370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 129 VTLIPGHGIGPEITVAVQKIFEA 197
           + +IPG GIGPE+T   +K   A
Sbjct: 5   IAVIPGDGIGPEVTEQAKKALNA 27


>SB_1757| Best HMM Match : UPF0126 (HMM E-Value=1.3)
          Length = 126

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 84  ATRAGAAQYSTGVRKVTLIPGHGIGPEITVAVQKIFEAA 200
           ATR+G    +  +  +   P H + PEIT AV K+F  A
Sbjct: 63  ATRSGTFTATALLGNIPAAPSHAM-PEITTAVSKVFVTA 100


>SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +2

Query: 56  CKNNQENCASDQSRRCSVQHWRAQGYA-HPWTWYWARDHGRR 178
           C   +  CA+  S   S+  W  QG+A   W   W R +  R
Sbjct: 265 CNKEEAACANKTSMEGSMTIWLPQGWALRKWRHPWQRTYNNR 306


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 32   ICENS*NGCKNNQENCASD 88
            +CEN+ N CKNN + C ++
Sbjct: 3381 VCENNVNVCKNNMDMCKNN 3399



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 32   ICENS*NGCKNNQENCASDQS 94
            +CEN+ N C+NN+  C ++++
Sbjct: 3479 VCENNLNVCENNENVCENNEN 3499


>SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)
          Length = 988

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 301 LAFTESIAFWGIPNLPSGPLTAVTSTSSHSIG 206
           +A    ++FW  P + + P T VTS ++ +IG
Sbjct: 616 IASWNGVSFWLYPGMAATPTTVVTSDAAGAIG 647


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/39 (20%), Positives = 23/39 (58%)
 Frame = +3

Query: 126  KVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAV 242
            ++ +  G  + P + +  Q+ +++  +P  W++ +VTA+
Sbjct: 2736 RILIEAGGELAPLLALLFQQSYDSGSLPAAWKDANVTAI 2774


>SB_59667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 32 ICENS*NGCKNNQENCASDQS 94
          +CEN+ N C+NN+  C ++++
Sbjct: 22 VCENNVNVCENNENVCENNEN 42


>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 80   HNFPDYSCSHFKNFRKLRRR 21
            H   DY  +HFK F KLR +
Sbjct: 2615 HELVDYMTAHFKQFLKLRNK 2634


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 159 PEITVAVQKIFEAAKVPIEWEEVDVTAV-RGPDGKFGIPQKAI 284
           P++ +  +  F   K P ++EEVD  A  R P G FGI   AI
Sbjct: 666 PDVEIPEEDEFYKEKSP-QFEEVDTFAPNRRPTGFFGIDMNAI 707


>SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29)
          Length = 407

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 129 VTLIPGHGIGPEITVAVQKIFEAAKVPIEWE-EVDVTAVRGPDGKFGIPQKAIDSVNANK 305
           VTL P H + P  TV  + +    +VP++ E  +D     GPDG  G+     +      
Sbjct: 283 VTLHP-HPLRPRRTVT-RSMKWVNRVPVDPEASLDRPGEMGPDGPAGLAGSQGEQGPQGP 340

Query: 306 IGLKGPLMTPVGKGYR 353
           +G+KG      G G R
Sbjct: 341 VGMKGDNGPQGGAGSR 356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,251,979
Number of Sequences: 59808
Number of extensions: 327660
Number of successful extensions: 1070
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)