Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30309
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    27   0.11 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.5  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 333 PVGKGYRSLNLALRKEFDLYANVRPCKSLEGIK 431
           PV + Y+SLNLA +K  + Y++    KSL  +K
Sbjct: 445 PVNENYKSLNLAAQKR-EYYSHYVAFKSLSYLK 476


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 264 GIPQKAIDSVNANKIGLKGPLMTP 335
           G+P     +V +NKIG  GPL+ P
Sbjct: 86  GVPSSL--NVISNKIGNGGPLLEP 107


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 488 ILTLGVLSDRDHVNVVV*GLDPF 420
           ILTLGVL +  H+   V GL  F
Sbjct: 6   ILTLGVLFNTLHIIYSVAGLKIF 28


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 334 GVIRGPFKPILLAFTESIAFWGIPNLPSGPL 242
           G+  G  + I ++FT ++A  G  ++PS  L
Sbjct: 416 GISLGIGEVITVSFTATLASIGAASIPSAAL 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,810
Number of Sequences: 438
Number of extensions: 3070
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)