SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30308
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    36   0.004
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    35   0.006
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.14 
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.18 
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.24 
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    29   0.55 
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    28   0.72 
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    28   0.95 
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    28   0.95 
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   1.3  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   2.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   2.2  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    27   2.2  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    26   2.9  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    26   2.9  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    26   2.9  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   3.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.8  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   5.1  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   5.1  
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit...    25   6.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   6.7  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    25   6.7  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.7  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   6.7  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    25   6.7  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   8.9  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   8.9  

>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
 Frame = +3

Query: 135 IEHHTKEFHKTLEQQFNSLTKSKDAQDF---SKAWKDGSESVLQQLNAFAKSLQGALGDA 305
           I+   K     LEQ+  +L ++++A++    ++ + D S S   +L A AK    A  DA
Sbjct: 98  IQPDEKTLQDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKK---AAQDA 154

Query: 306 NGKAKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 419
              A E   +++ +IER+A    K A  + E+ ATALRE
Sbjct: 155 E-LASERAREAQSSIERSASLREKQAREEAERAATALRE 192


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
 Frame = +3

Query: 165 TLEQQFNSLTKSKDAQD---FSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQ 335
           T+E  ++SL KSK +     F +  ++  + +L   N + + L   + +A  KA+++LEQ
Sbjct: 8   TIELDYDSL-KSKISNFNSIFDRFLQEERKKLLNNKNEYLRQLS-EINEAQKKAEKSLEQ 65

Query: 336 SRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQKL 467
           +    +   E L K H +    E+   + +EKL A ++   + S++L
Sbjct: 66  TEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEEL 112


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 30/131 (22%), Positives = 53/131 (40%)
 Frame = +3

Query: 18  PHSVSRQYIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTK 197
           P S S   + A    +      L +   V R    F + +EH+     K+LE+Q + L +
Sbjct: 171 PSSSSCNLVNANSLDIYLNINNLKKSKSVPRLRGQFMEPVEHN-HPLSKSLEEQSSFLEQ 229

Query: 198 SKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRK 377
           SKDA     A      S+     +   S + +L   N K++ +L+    ++ R       
Sbjct: 230 SKDASSNLTACNRSGSSLSSNFYSSRLSKKTSLASLN-KSRASLQHKIMSLSRNIIRRVF 288

Query: 378 AHPDVEKNATA 410
             P+V  + +A
Sbjct: 289 HKPEVHLDPSA 299


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 17/81 (20%), Positives = 38/81 (46%)
 Frame = +3

Query: 264 NAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQN 443
           N  + ++  AL +   KA + LE+  ++ E + EE+   H    +  T+ +   +   + 
Sbjct: 337 NLVSLAIYEALYEKFLKACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEK 396

Query: 444 TVQESQKLAKKVSSNVQETNE 506
            +QE  ++ K +    Q+ +E
Sbjct: 397 IIQEKSRVDKMIDEYRQKLSE 417


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 231 KDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 368
           KDG+++   +LN FAK L  +    + +A +   +    IE+++ E
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 210 QDFSKAWKDGSESVLQQLNAFAKSLQGALGD-ANGKAKEALEQSR-QNIERTAE 365
           +D + A+ +   SVLQ+L+   + +QG LG   N     AL Q + QN++   E
Sbjct: 79  EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQE 132


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 24/88 (27%), Positives = 45/88 (51%)
 Frame = +3

Query: 135 IEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 314
           IE   K F K ++   NS  K+ +A  F     +G++  ++ + A  ++L   L +    
Sbjct: 73  IESSMKSF-KPVKIDLNSQLKAINA--FEAKASEGAKKNVELVKAELQNLSATLKN---- 125

Query: 315 AKEALEQSRQNIERTAEELRKAHPDVEK 398
               +EQ+R   E T E++++A P++EK
Sbjct: 126 ----IEQARPTEEITIEDMKQAVPEIEK 149


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +3

Query: 105 RRDAPDFFKDIEHHTKEFHKTLEQQFNSLT---KSKDAQDFSKAWKDGSESVLQQLNAFA 275
           ++   DFFK +    ++ H TL ++ NSL+    +K        +  G   +  +LN   
Sbjct: 56  KKSEQDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLKLNLLL 115

Query: 276 KSLQGALGDA 305
           + LQG +  A
Sbjct: 116 R-LQGRMNSA 124


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = +3

Query: 165 TLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGA------LGDANGKAKEA 326
           T++ +  SL K  D     +  ++  ES L  L      L  A      L D+  KAK  
Sbjct: 354 TIQIELESLRKETDTTSVER--REKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTE 411

Query: 327 LEQSRQNIERTAEE 368
           LEQ+R  +ERT  E
Sbjct: 412 LEQARIELERTQRE 425


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 342 ASTVPKPPWPCRSRLRALPG 283
           AST+ K PWP  + L  +PG
Sbjct: 38  ASTLEKEPWPASTALLVMPG 57


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +3

Query: 111 DAPDFFKDIEHHTKEFHKTLEQ--QFNSLTKSKDAQDFSKAW 230
           D   +F D++ H K FH   E+  +   +  +K   D  K W
Sbjct: 665 DMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEW 706


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +3

Query: 279 SLQGALGDANGKAKEALEQSRQNIE-----RTAEELRKAHPDVEKNATALREKLQAA 434
           S++  L + N + KE +E     +      RT +E        EKN   LRE+L+ A
Sbjct: 520 SMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTA 576


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = +3

Query: 240 SESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALRE 419
           S  +   + A  K L GA      KAKE  ++ R   +RTA E+RK    +E+     R 
Sbjct: 143 SRRISGMILAHFKRLSGA---DEKKAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRA 199

Query: 420 KLQAAVQNTVQESQ 461
           +  A  Q    + Q
Sbjct: 200 ERAAEAQRVAGKEQ 213


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
 Frame = +3

Query: 312 KAKEALE---QSRQNIERTAEELRKAHPDVEKNATALREKLQAAV-----QNTVQESQKL 467
           K KE +E   Q ++ +ER  E LRK   D  K+      + +AA+     + +  E QKL
Sbjct: 128 KEKEEMEGSLQGKEKLEREVENLRK-ELDKYKDLVETEAEKRAAITKEECEKSWLEQQKL 186

Query: 468 AKKVSSNVQETNEKL 512
            K +      T +KL
Sbjct: 187 YKDMEQENASTIQKL 201


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/59 (25%), Positives = 34/59 (57%)
 Frame = +3

Query: 312 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSN 488
           K+++ LE S Q +E    E +   P+V++     +EK ++ V+   +E +K+++ + S+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-EKISRNLRSS 188


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 147 TKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQ-GALGDA 305
           +K+   + E+Q   +T      DFS   K   +     L+AF K L+  + GDA
Sbjct: 89  SKKSSASAEEQTEDITTESGELDFSSMKKKKKKKKSADLSAFEKELEASSTGDA 142


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 75  CIALAQGAMVRRDAPDFFKDIEHHTKEFH-KTLEQQFNSLTKSKDAQDFSKAWKDGSESV 251
           C  + +G  +RR  P +++ I      ++ KTL + FN+  + +++  + KA ++G   V
Sbjct: 13  CEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYEKAIRNGQVKV 72

Query: 252 LQQL 263
             Q+
Sbjct: 73  NNQI 76


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +3

Query: 159 HKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANG---KAKEAL 329
           H+T+ +Q    +         +A  +  ES L   N   ++    L ++N    K +E +
Sbjct: 625 HQTITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDV 684

Query: 330 EQSRQNIERTAEELRKA 380
           +   +NI+   E+LRK+
Sbjct: 685 DSLEKNIQTLKEDLRKS 701


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 369 LRKAHPDVEKNATALREKLQAAVQNTVQE 455
           L  AH D+E   T++RE+L++ +    +E
Sbjct: 267 LDSAHSDLELELTSIRERLESLILEKQEE 295


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 306 NGKAKEALEQSRQNIERTAEELRKAHPDVEKN 401
           N K KE  E++     +  EELR+A PD E++
Sbjct: 22  NEKLKEDFEENVSIDVKIHEELRRALPDYEES 53


>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
           subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 231 KDGSESVLQQLNAFAKSLQG 290
           K GSESVL QLN     L+G
Sbjct: 40  KSGSESVLSQLNRVLMYLKG 59


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 421 FSRRAVAFFSTSGWALRSSSAVRSMF 344
           FSR  V FFS    AL+S S + +MF
Sbjct: 570 FSRGGVLFFSILFCALQSLSEIANMF 595


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 297 GDANGKAKEALEQSRQNIERTAEE 368
           G  NG+AKE  E+ R   ++T E+
Sbjct: 473 GKGNGRAKETPEEKRARKKKTKED 496


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +2

Query: 8   RISSALSLSTVHHGRQVRSSLRLHRSGPRSDGATRRSR 121
           +I ++L   T+HHG +V+  ++ ++ G  S  ++R ++
Sbjct: 122 KIRNSLYSRTIHHGNRVQKKIK-NKHGKNSSKSSRAAQ 158


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 348 CSASTVPKPPWPCRSRLRALPGDS 277
           C  +T+PKPP+   + L  LP  S
Sbjct: 290 CPHTTIPKPPYQSDTDLTELPTKS 313


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 333 QSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSS 485
           ++RQ  E  A+ +RK+ PDV      +   ++ +V +  +E   +   +SS
Sbjct: 284 ENRQFSEYVADRIRKSFPDVSFKNLHVLSCMEDSVMSPFRELGSVTSSMSS 334


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/63 (22%), Positives = 33/63 (52%)
 Frame = +3

Query: 327 LEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNE 506
           ++   Q+IE T   L K   D+E++      +++   +  V + Q+  ++++  +Q+T E
Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553

Query: 507 KLA 515
            L+
Sbjct: 554 VLS 556


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 786

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 31/124 (25%), Positives = 50/124 (40%)
 Frame = +3

Query: 78   IALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQ 257
            + L  G +   D  D+    E+ T      + + F  +      +D SK  +  + +   
Sbjct: 661  LELLIGGISDVDVEDWKSHTEYRTYIATDPVIKWFWEIIAGWKNEDRSKLLQFATGTSRI 720

Query: 258  QLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAV 437
             +N F + LQG+ G      ++A    +  +  T    R   PD     T L EKL  AV
Sbjct: 721  PVNGF-RDLQGSDGPRKFTIEKAGTPDQLPVAHTCFN-RLDLPDYPSKDT-LHEKLSLAV 777

Query: 438  QNTV 449
            +NTV
Sbjct: 778  ENTV 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,202
Number of Sequences: 5004
Number of extensions: 26215
Number of successful extensions: 159
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -