Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30304
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    41   5e-05
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    25   2.9  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    24   5.1  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    24   6.7  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    24   6.7  

>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 40.7 bits (91), Expect = 5e-05
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +1

Query: 223 FVDLPLSGMRETIAKRLTVAKQSIPHYQLSVTVN 324
           + DLPLS MR+ IA RL  +K   PHY ++V+VN
Sbjct: 255 YEDLPLSNMRKIIASRLAESKNMNPHYYVTVSVN 288



 Score = 26.6 bits (56), Expect = 0.95
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 82  RVYASPMARRLAEIKHI 132
           RV+ASP+AR+LAE K +
Sbjct: 185 RVFASPLARKLAEEKDL 201


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 76  RKQVRRGQPQGWDVGRPERGRGRG 5
           +K+V RG+ +G   GR  RGRGRG
Sbjct: 91  KKEVVRGRGRG--RGRGTRGRGRG 112


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 24  SGRPTSQPCGCPRRTCFLG 80
           SG  TS PC CP    F G
Sbjct: 249 SGGGTSMPCTCPIHRIFSG 267


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 229 DLPLSGMRETIAKRLTVAKQSIPHYQL 309
           D+PLS +R       ++  Q+ PH Q+
Sbjct: 435 DIPLSELRTQFNVHFSIVSQTNPHVQV 461


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 241 SGMRETIAKRLTVAKQSIPHYQLSV 315
           SG+ + + K + +A Q+I  +QLS+
Sbjct: 768 SGLSKVLGKHIALASQTIALFQLSL 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,720
Number of Sequences: 5004
Number of extensions: 5478
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)