Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30304
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37... 37 0.004
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 35 0.017
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 35 0.017
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811... 34 0.030
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897... 26 8.0
01_02_0009 - 10135444-10135536,10135860-10135909,10136292-101369... 26 8.0
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 23 9.2
>06_01_0037 -
369498-369568,369668-369760,369889-369991,370061-370156,
370227-370293,370379-370446,370606-370681,370890-370975,
371065-371150,371337-371409,371490-371735,371845-371937,
372045-372119,372496-372540,372631-372708,372805-372921,
373865-373894
Length = 500
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +1
Query: 223 FVDLPLSGMRETIAKRLTVAKQSIPHYQLSV 315
+VDLP + +R+ A RL +KQ+IPHY L+V
Sbjct: 271 YVDLPNTQIRKVTANRLLHSKQTIPHYYLTV 301
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 34.7 bits (76), Expect = 0.017
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +1
Query: 220 TFVDLPLSGMRETIAKRLTVAKQSIPHYQLSV 315
++ D+P + +R+ A RL +KQ+IPHY L+V
Sbjct: 310 SYTDVPNAQIRKVTANRLLSSKQTIPHYYLTV 341
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 34.7 bits (76), Expect = 0.017
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +1
Query: 220 TFVDLPLSGMRETIAKRLTVAKQSIPHYQLSV 315
++ D+P + +R+ A RL +KQ+IPHY L+V
Sbjct: 1816 SYTDVPNTQIRKVTANRLLSSKQTIPHYYLTV 1847
>06_03_0163 -
17380601-17380710,17380796-17380856,17381076-17381150,
17381538-17381600,17381679-17381755,17382432-17382515,
17382610-17382654,17382729-17382789,17383658-17384053,
17384220-17384289,17387010-17387083,17387202-17387246,
17387342-17387391,17387846-17387947,17388587-17388620,
17388681-17388758,17388915-17388965,17389082-17389085,
17389182-17389256,17389530-17389624
Length = 549
Score = 33.9 bits (74), Expect = 0.030
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 223 FVDLPLSGMRETIAKRLTVAKQSIPHYQLSVTV 321
+ D+P S +R+ IAKRL +KQ+ PH LS V
Sbjct: 348 YEDIPNSQIRKVIAKRLLESKQTTPHLYLSQDV 380
>01_06_0541 -
30088910-30089107,30089421-30089477,30089563-30089721,
30090639-30090777,30090863-30091247,30091612-30091816
Length = 380
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Frame = -2
Query: 85 PCPRKQVRR-----GQPQGWDVGRPERGRGRG 5
P P Q R G P GR ERGRGRG
Sbjct: 62 PAPPTQAAREARGGGAPSRGGFGRGERGRGRG 93
>01_02_0009 -
10135444-10135536,10135860-10135909,10136292-10136901,
10137891-10138151
Length = 337
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 94 WRIPCPRKQVRRGQPQGWDVGRPERGRG 11
W + +K R G+PQG+ R GRG
Sbjct: 256 WPVGFVQKLFRSGRPQGYTPSRGRVGRG 283
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 23.4 bits (48), Expect(2) = 9.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 9 RPLPRSGRPTSQPCGCPRR 65
RPL + RPTS PC RR
Sbjct: 70 RPLHYACRPTSLPCRRRRR 88
Score = 20.6 bits (41), Expect(2) = 9.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +3
Query: 39 SQPCGCPRRTCFLGQG 86
S PC C R+ +G G
Sbjct: 115 SGPCRCRRKESLVGMG 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,982,689
Number of Sequences: 37544
Number of extensions: 56775
Number of successful extensions: 238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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