Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30304
         (326 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   3e-06
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                34   0.024
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                27   3.6  
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   26   6.3  
SB_57864| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  
SB_48331| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)                26   8.3  

>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 21/33 (63%), Positives = 26/33 (78%)
 Frame = +1

Query: 223 FVDLPLSGMRETIAKRLTVAKQSIPHYQLSVTV 321
           + D+PLS MR+ IAKRL  +KQ+IPHY LSV V
Sbjct: 204 YEDIPLSNMRQVIAKRLLQSKQTIPHYYLSVDV 236


>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 382

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +1

Query: 220 TFVDLPLSGMRETIAKRLTVAKQSIPHYQLS 312
           TF D+P + MR  IAKRL  +K +IPH   S
Sbjct: 162 TFTDVPNTEMRREIAKRLLKSKTTIPHVYAS 192


>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 515

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 85  PCPRKQVRRGQPQGWDVGRPERGRG 11
           P P  QVR  +P  W    P RG G
Sbjct: 230 PWPEDQVRGPRPDNWGPNDPRRGPG 254


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 3   SPRPLPRSGRPTS 41
           SP+P PRS RPTS
Sbjct: 362 SPKPSPRSSRPTS 374


>SB_57864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 82  CPRKQVRRGQPQGWDVGRPERGRG 11
           C +K+ R+ +P  WD  RP++  G
Sbjct: 58  CEKKKHRKKRPLAWDRTRPKKQNG 81


>SB_48331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 9   RPLPRSGRPTSQPCGCPRRT 68
           R   RS RPT   CGC R T
Sbjct: 338 RSTRRSSRPTQAICGCARPT 357


>SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 24  SGRPTSQPCGCPRRT 68
           SGRPT   CGC R T
Sbjct: 932 SGRPTQAICGCARPT 946


>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
          Length = 1281

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 79  PRKQVRRGQPQGWDVGRPERGRGR 8
           P K+ +   P     GRP RGRGR
Sbjct: 513 PSKRGKNINPHSRGTGRPARGRGR 536


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,442,790
Number of Sequences: 59808
Number of extensions: 54722
Number of successful extensions: 244
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)