Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30304
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   2.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.0  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   5.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.0  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   5.0  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   5.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    20   8.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 88  IPCPRKQVRRGQPQGWDVGRPERGRGRGL 2
           I C  + V+RG    + + R   GRG G+
Sbjct: 482 IDCINRVVQRGTKMQFCIFRTANGRGWGV 510


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
 Frame = +1

Query: 220 TFVDLPLSGMRE---TIAKRL 273
           T   LPLSGM+E   TI K L
Sbjct: 385 TSASLPLSGMQEELHTILKEL 405


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
 Frame = +1

Query: 220 TFVDLPLSGMRE---TIAKRL 273
           T   LPLSGM+E   TI K L
Sbjct: 385 TSASLPLSGMQEELHTILKEL 405


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
 Frame = +1

Query: 220 TFVDLPLSGMRE---TIAKRL 273
           T   LPLSGM+E   TI K L
Sbjct: 385 TSASLPLSGMQEELHTILKEL 405


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
 Frame = +1

Query: 220 TFVDLPLSGMRE---TIAKRL 273
           T   LPLSGM+E   TI K L
Sbjct: 385 TSASLPLSGMQEELHTILKEL 405


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
 Frame = +1

Query: 220 TFVDLPLSGMRE---TIAKRL 273
           T   LPLSGM+E   TI K L
Sbjct: 385 TSASLPLSGMQEELHTILKEL 405


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
 Frame = +1

Query: 220 TFVDLPLSGMRE---TIAKRL 273
           T   LPLSGM+E   TI K L
Sbjct: 385 TSASLPLSGMQEELHTILKEL 405


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -1

Query: 293 MLCLATVSLLAMVSLMPDSGRSTK 222
           ++CL  ++ + +V+  PD   ++K
Sbjct: 5   IICLVLMAAIVLVAARPDESYTSK 28


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
 Frame = +1

Query: 220 TFVDLPLSGMRE---TIAKRL 273
           T   LPLSGM+E   TI K L
Sbjct: 453 TSASLPLSGMQEELHTILKEL 473


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
 Frame = +1

Query: 220 TFVDLPLSGMRE---TIAKRL 273
           T   LPLSGM+E   TI K L
Sbjct: 453 TSASLPLSGMQEELHTILKEL 473


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -1

Query: 293 MLCLATVSLLAMVSLMPDSGRSTK 222
           ++CL  ++ + +V+  PD   ++K
Sbjct: 5   IICLVLMAAIVLVAARPDESYTSK 28


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -1

Query: 293 MLCLATVSLLAMVSLMPDSGRSTK 222
           ++CL  ++ + +V+  PD   ++K
Sbjct: 5   IICLVLMAAIVLVAARPDESYTSK 28


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 246 HEGDHRQEADGR 281
           HE D   E+DGR
Sbjct: 54  HESDDLHESDGR 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,069
Number of Sequences: 438
Number of extensions: 417
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)