Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30303
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2Y889 Cluster: Tetratricopeptide TPR_4; n=1; Nitrososp...    33   5.1  
UniRef50_Q1ASW3 Cluster: PfkB; n=1; Rubrobacter xylanophilus DSM...    33   5.1  
UniRef50_A1ZW36 Cluster: Lipoprotein, putative; n=1; Microscilla...    32   8.9  

>UniRef50_Q2Y889 Cluster: Tetratricopeptide TPR_4; n=1; Nitrosospira
           multiformis ATCC 25196|Rep: Tetratricopeptide TPR_4 -
           Nitrosospira multiformis (strain ATCC 25196 / NCIMB
           11849)
          Length = 900

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 254 GWRR-RQWSELELELQLGWRRRRWSELEQELQL 159
           GW R ++  +L+  ++  W+RR W EL+Q L++
Sbjct: 554 GWERLKRIEDLQRLMRFSWKRRNWDELDQWLEV 586


>UniRef50_Q1ASW3 Cluster: PfkB; n=1; Rubrobacter xylanophilus DSM
           9941|Rep: PfkB - Rubrobacter xylanophilus (strain DSM
           9941 / NBRC 16129)
          Length = 382

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 242 RQWSELELELQLGWRRRR 189
           R+W E+EL ++ GWRRRR
Sbjct: 341 RRWEEVELRIERGWRRRR 358


>UniRef50_A1ZW36 Cluster: Lipoprotein, putative; n=1; Microscilla
           marina ATCC 23134|Rep: Lipoprotein, putative -
           Microscilla marina ATCC 23134
          Length = 585

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 242 RQWSELELELQLGWRRRRWSELEQELQLGW 153
           R+WS+ +L +Q G    +W ELE+ L LGW
Sbjct: 138 RKWSK-KLVIQTGKEGFKWVELEENLALGW 166


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,268,158
Number of Sequences: 1657284
Number of extensions: 2556033
Number of successful extensions: 9208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9172
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)