Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30302
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 27 1.3
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ... 27 2.2
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 27 2.2
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 26 3.8
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 5.1
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 25 5.1
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 25 5.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 6.7
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 8.9
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 8.9
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 8.9
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 490 SAYIVSSIGLKSLKCLLLYFWLSNFTFADIAIMFAVRSSISLRKRAMWISLTITRTS 320
S + V SIGL +L CL +FW ++ + F +S R W L T S
Sbjct: 1214 SNWDVFSIGLWALSCLTFWFWTGVYSQSLYTYEFYKSASRIFRTPNFWAVLCGTIVS 1270
>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 26.6 bits (56), Expect = 2.2
Identities = 7/33 (21%), Positives = 22/33 (66%)
Frame = +3
Query: 360 LRSEIDDLTANMIAMSANVKLLNQKYNNKHFND 458
++ ++D++ +++ +S+ + ++YN KH N+
Sbjct: 1 MKKDLDEIDTDIVTLSSFILQEQRRYNQKHKNE 33
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 243 LSGLRTASQNHHPSSSWTHPSLPSWFPFACTS 148
LSG+ P+SS TH S PS P TS
Sbjct: 241 LSGIIGPQMTKSPASSVTHFSTPSMLPIGGTS 272
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 490 SAYIVSSIGLKSLKCLLLYFWLSNFTFADIAIMFAVR 380
SA I S+G K+ + + +NF F +A MF R
Sbjct: 355 SAIIFQSVGFKNSISVSIVVGATNFVFTIVAFMFIDR 391
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 129 LIPDPITMYTQKETMKEVKDASKNLM 206
L PDP +QK T+K+ K A L+
Sbjct: 771 LAPDPPPFTSQKITLKQTKQADMRLL 796
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 305 PNDSRSHRHYP--SFHSPIALVHCRASVLPLKITTHQVLGRILHFL 174
PN+S++ P F SP+ L RA V+PL++ + ++LH L
Sbjct: 16 PNESKTGNESPEKKFSSPVLLQ--RAKVIPLRLEYEE--RKLLHLL 57
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 25.4 bits (53), Expect = 5.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 113 HHCVNTAPANGRCHC 69
H+C T P GRC C
Sbjct: 283 HYCPETIPYTGRCAC 297
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 66 ITVTSTVRGCSVNTVMAEKHALIPD-PITMYTQK 164
+ V + G +NT KHA++ D PI + K
Sbjct: 237 VLVVDVIEGVMINTTRIIKHAILHDMPIVLVLNK 270
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 360 LRSEIDDLTANMIAMSANVKLLNQKYNNKHFNDF 461
LRS++ D+ +I++ LL N KH F
Sbjct: 341 LRSKVQDILLRIISVCGTKSLLRNLTNAKHLRIF 374
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 296 SRSHRHYPSFHSPIALVHCRASVLPL 219
S+SH H+PS + + + S+LPL
Sbjct: 542 SKSHNHHPSSQVEKSTSNSKGSMLPL 567
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 391 FAVRSSISLRKRAMW 347
F+ RSS SLRKR +W
Sbjct: 143 FSNRSSFSLRKRYLW 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,236
Number of Sequences: 5004
Number of extensions: 41264
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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