Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30302
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117...    29   1.7  
03_01_0068 - 546475-546615,546709-546819,547449-547482,547582-54...    27   8.9  
02_01_0016 + 110796-110979,111252-111768,111847-112213                 27   8.9  

>10_01_0097 -
           1171949-1172047,1172520-1172591,1172791-1172949,
           1172998-1173381,1173478-1175253,1175329-1175452,
           1176859-1177027,1177131-1177226,1177339-1177527,
           1177965-1179303
          Length = 1468

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/77 (23%), Positives = 29/77 (37%)
 Frame = -2

Query: 338 HDYQNKQRQ*QPNDSRSHRHYPSFHSPIALVHCRASVLPLKITTHQVLGRILHFLHGFLL 159
           H+ +  + Q  P    S   Y     P+    CRA +      + + + R  H +     
Sbjct: 444 HNPEEAELQCVPKSFESAEEYIRVFEPLLFEECRAQLYSSYEESLESVSRDAHVMVRVKT 503

Query: 158 RVHRNRVWYECVLLGHH 108
              R R WY+ V+L  H
Sbjct: 504 VERRERGWYDVVVLPMH 520


>03_01_0068 -
           546475-546615,546709-546819,547449-547482,547582-547673,
           547904-548062,548178-548251,548477-548551,548820-548903,
           548981-549110
          Length = 299

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -3

Query: 400 AIMFAVRSSISLRKRAMWISLTITRTSNANSSPMIVAVTVTTQAFIRRSHLFIVGPPYCL 221
           A+  A  +S+ L  RA+ ++     +S++ +SP + A T    +FI+   +    PP  L
Sbjct: 4   AVSRAAFASVLLAPRAVGVAARCASSSSSAASPSVAAATYDHASFIK--EVAATDPPEHL 61

Query: 220 S 218
           S
Sbjct: 62  S 62


>02_01_0016 + 110796-110979,111252-111768,111847-112213
          Length = 355

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 165 ETMKEVKDASKNLMGGDFERQYGGPTMNKCDRRM 266
           E+   V++ + N  GG   R  G P MN+C  R+
Sbjct: 73  ESPVTVRECNTNWFGGFSVRMEGTPEMNRCTARV 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,553,179
Number of Sequences: 37544
Number of extensions: 283128
Number of successful extensions: 810
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)