Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30302
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AB009362-1|BAA23766.1|  118|Caenorhabditis elegans protein ( Cae...    28   3.4  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z30215-5|CAA82938.1|  199|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine re...    27   6.0  

>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 399 AMSANVKLLNQKYNNKHFNDFKPMEDTIYADEXQDLS 509
           A  A++KL N++   K+ N   PME  +Y D     S
Sbjct: 38  ASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFS 74


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 344 LPHDYQNKQRQ*QPNDSRSHRHYPSFHSPIALVHCRASVLPLKITTHQVLGRILHFLH 171
           L H ++  QR+ +  D  + ++ P  H+   L HC      L   T   +GR+ HF H
Sbjct: 413 LLHAHKCSQREKENRDFAA-KNQPPPHAACTLPHCSTMKEVLTHMTSCNVGRLCHFAH 469


>AB009362-1|BAA23766.1|  118|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA, partial cds. ).
          Length = 118

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 344 LPHDYQNKQRQ*QPNDSRSHRHYPSFHSPIALVHCRASVLPLKITTHQVLGRILHFLH 171
           L H ++  QR+ +  D  + ++ P  H+   L HC      L   T   +GR+ HF H
Sbjct: 17  LLHAHKCSQREKENRDFAA-KNQPPPHAACTLPHCSTMKEVLTHMTSCNVGRLCHFAH 73


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 393 MIAMSANVKLLNQKYNNKHFNDFKPMEDTIYADEXQDL 506
           M+  S   K +N KY N+   ++K ++  +YA E +D+
Sbjct: 295 MVMRSELFKAINMKYPNRRPIEYKDVDGFLYAMELKDV 332


>Z30215-5|CAA82938.1|  199|Caenorhabditis elegans Hypothetical
           protein F40F12.7 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 353 YVDLPHDYQNKQRQ*QPNDSRSHRHYPSFHSPIALVHCRASVLPLKITTHQVLGRILHFL 174
           +V L H ++  QR+ + N+  + R+    H+   L HC      L   T+  +GR+ HF 
Sbjct: 18  FVLLLHAHKCSQRE-KENNEFAARNQLLPHAACTLPHCSTMKEVLIHMTNCNVGRLCHFA 76

Query: 173 H 171
           H
Sbjct: 77  H 77


>AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein134 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -2

Query: 299 DSRSHRHYPSFHSPIALVHCRAS----VLPLKITTHQVLGRILHFL 174
           D + H++YP F    A++ CR       +  +IT+++ +  ++ FL
Sbjct: 5   DIQFHQYYPKFQKKTAIILCRFQENFVAIVTQITSYEYIASVVCFL 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,485,134
Number of Sequences: 27780
Number of extensions: 239505
Number of successful extensions: 825
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)