Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30302
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 29 1.9
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 29 1.9
At2g47360.1 68415.m05912 expressed protein 28 3.2
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 28 4.3
At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to SP|P1... 28 4.3
At4g11530.1 68417.m01850 protein kinase family protein contains ... 27 7.5
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 27 9.9
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 27 9.9
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 27 9.9
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 27 9.9
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 27 9.9
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 27 9.9
At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) fa... 27 9.9
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 339 REIHIARLRSE--IDD---LTANMIAMSANVKLLNQKYNNKHFNDFKPME 473
RE+HI RL SE I++ AN + N+ + N +YN + F PME
Sbjct: 1191 REVHIYRLISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPME 1240
>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 572
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 250 LFIVGPPYCLSKSPPIKFLDASFTSFMVSFCVYIVIGSGMSACFSAITV 104
LF+ P K+P F+ + S S+ YI+IG G + C A T+
Sbjct: 16 LFLHSPICSSDKAPNYSFMRDATGSPTTSYYDYIIIGGGTAGCPLAATL 64
>At2g47360.1 68415.m05912 expressed protein
Length = 303
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = -3
Query: 511 VLRSWXSSAYIVSSIGLKSLKCLLLYFWLSNFTFADIAIMFAVRSSISLRKRAMWISLTI 332
+L S SSA + S+ + +F S F A+ AI++AV SSIS+ + ++ I
Sbjct: 37 LLLSRLSSASFLFSLTKSQPQTESSFFVFSLFLRANPAIVYAVVSSISVYTLVLGLTTKI 96
Query: 331 TRTSNANS 308
T T +S
Sbjct: 97 TATDPKHS 104
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -2
Query: 176 LHGFLLRVHRNRVWYECVLLGHHCVNTAPANGRCHC-Y*LRSIQFIRSSS 30
L G+ V N + G+HC N CHC Y L + +RS S
Sbjct: 405 LSGYCNAVQPNSTFSTLTKCGNHCGKGKEPNQGCHCVYPLTGVFTLRSPS 454
>At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to
SP|P14712 Phytochrome A {Arabidopsis thaliana}
Length = 1122
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 272 SFHSPIALVHCRASVLPLKITTHQVLGRIL 183
S +PI LVHCR S P H+V G I+
Sbjct: 151 SLLNPI-LVHCRTSAKPFYAIIHRVTGSII 179
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 253 HLFIVGPPYCLSKSPPIKFLDASFTSFMVSFCVYIVIGSGMSACFS 116
++ + PP LS +PP + D FT+F++ F + + + CFS
Sbjct: 247 NITLPSPPPPLSLTPPHEAKDFVFTNFLI-FLISLDSVTAQEICFS 291
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 194 GRILHFLHGFLLRVHRNRVWYECVL 120
G ILHF HG L++ +RV+ E ++
Sbjct: 368 GIILHFSHGHHLKLENSRVYDENII 392
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -3
Query: 277 TQAFIRRSHLFIVGP---PYCLSKSPPIKFLDASFTSFMVSFCVYIVIGS 137
T + ++ S+ F G P CLS+ P F+D+ T F FC + + S
Sbjct: 10 TNSIVKASYWFPDGKSQSPECLSQGTPSSFIDS--TLFTHLFCAFADVDS 57
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 239 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 129
R +L KIT LG ++H +L+ HRNRV+++
Sbjct: 380 RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHD 413
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 239 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 129
R +L KIT LG ++H +L+ HRNRV+++
Sbjct: 380 RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHD 413
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 239 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 129
R +L KIT LG ++H +++ HRNRV++E
Sbjct: 373 RVELLAKKITE---LGYSCFYIHAKMVQDHRNRVFHE 406
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 239 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 129
R +L KIT LG ++H +++ HRNRV++E
Sbjct: 373 RVELLAKKITE---LGYSCFYIHAKMVQDHRNRVFHE 406
>At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 466
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 65 NNSDIDRSRVQC*HSDGREARTHTRPD-YD 151
NN +IDRSR+ H++ A TH D YD
Sbjct: 376 NNREIDRSRMPLNHAETITASTHVCNDCYD 405
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,823,696
Number of Sequences: 28952
Number of extensions: 223170
Number of successful extensions: 661
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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