Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30301
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    26   3.8  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   3.8  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   5.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   5.1  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   6.7  
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    25   6.7  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   8.9  

>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 23/86 (26%), Positives = 32/86 (37%)
 Frame = -3

Query: 262 LVQHLLFHKGITVVVVRRCPHCWVGVMTQVTLCGARLPSDLSSREHERSGAVRPVADNFF 83
           L+ HL   + +   +  RCP   V V+    L   +    L S      G +   A NF 
Sbjct: 76  LLSHLSLCQNLIEFLTARCPRLVV-VLPWTVL---QELDGLKSESSSTCGYLARQAHNFL 131

Query: 82  FRMFRILVSVREEVGVERHCYTCRYG 5
            + FR  VS      V  HC +   G
Sbjct: 132 LQCFRSNVSSLRGQKVHEHCSSTEKG 157


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +2

Query: 8   IPTSVTMSLNPNFFPN-GYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRH 184
           IP SV  S   NF      Q+P      + S  P    P+     +V ++P P    + +
Sbjct: 159 IPPSVEASSGQNFNQGIASQNPAISTSNLPSTTPLYIPPVNYGANQVSQQPNPQLPGVSN 218

Query: 185 HPNPAMRAPP 214
           + NP+  + P
Sbjct: 219 YYNPSATSKP 228


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 122 LVLPGAKVRR-EPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQ 298
           L L GA V+R  P P      H  N A R   NH   +++  +     QF +P N  +  
Sbjct: 147 LELLGAHVQRVTPAPIVDP-NHFVNTARRNAANHTVDESIPGKGYFANQFENPANWQAHF 205

Query: 299 N 301
           N
Sbjct: 206 N 206


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 104 PYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQ 265
           P    PL  P  ++ R+P P  S     P+    APP H  R+    + + H +
Sbjct: 44  PVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQ-REASPVKNIEHSE 96


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 139  SSREHERSGAVRPVADN-FFFRMFRILVSVREEVGVE 32
            +S +  RS  ++P ADN   FR+ R ++S  EE+ ++
Sbjct: 980  ASTDESRSVLIKPKADNVILFRLKRFIMS-SEEINLD 1015


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 415 ARKRLMHAFTRLVVFVFE-EGQVDKNRQRRSLLPDRVCNVLFRV*IDWRVELLVQHL 248
           A K ++++ T  V F+    G++  N  R+ L+P  V N L  +      + L +HL
Sbjct: 40  ALKAMINSATLFVSFLTSASGEIATNNNRKILMPQDVLNALDEIEYPEFSKTLKKHL 96


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 26  MSLNPNFFPNGYQDPKHPEEEVV 94
           ++LNP FF N   + + P E+ V
Sbjct: 461 LALNPEFFKNANGEQQAPNEQAV 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,290
Number of Sequences: 5004
Number of extensions: 42512
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)