Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30301
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 34 0.059
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 31 0.55
06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141 31 0.73
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 29 1.7
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 29 2.2
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 3.9
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141... 28 3.9
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579... 28 5.1
09_01_0037 - 604001-604957 28 5.1
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 5.1
04_04_0347 + 24564589-24565296 28 5.1
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 28 5.1
08_01_0021 + 161613-162236 27 6.8
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 27 8.9
07_01_0662 + 4972953-4973645,4973758-4974046,4974790-4974803,497... 27 8.9
02_04_0037 + 19104367-19104978 27 8.9
01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038 27 8.9
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 34.3 bits (75), Expect = 0.059
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +2
Query: 29 SLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNP 196
S +P+ FP Q P P+ + NWP P + PGA PGP + P P
Sbjct: 244 SPSPSSFPLKQQQPPPPQ---LFNWPGHAPPQLPPGASPLFPPGPAAFHPSSRPMP 296
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 31.1 bits (67), Expect = 0.55
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 56 GYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDY 226
GY P+ PY P P ++P + H+ P + PPNHDY
Sbjct: 778 GYSQPEQRPAYSQPYPPYGAPPQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDY 834
>06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141
Length = 564
Score = 30.7 bits (66), Expect = 0.73
Identities = 24/93 (25%), Positives = 42/93 (45%)
Frame = +2
Query: 101 WPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPI 280
WP T+ GA R P P + P P MRAP + + ++ +HK + +
Sbjct: 414 WPLTTSEK--EGAAESRSPPPMKVKRHSMPPPIMRAPGQFEDNEVKSQEPSVHK-LAAQV 470
Query: 281 NLYSEQNIANSIRQQTSPLPIFIDLSFLKHKHD 379
N ++NI +R + L ++L+ L++ D
Sbjct: 471 NKLRKENI--ELRDSNAELE--VELAELRNNVD 499
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 119 PLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 214
P PG R PGP + P+P R+PP
Sbjct: 50 PSQAPGPAARHAPGPARHHGAPAPHPGRRSPP 81
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 155 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHK 262
P P L+ HP P + PN D ++ + K V+ K
Sbjct: 265 PPPPPPILQEHPQPVVAVVPNVDEQEVVAKPAVIAK 300
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 113 TTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 214
T PL +P P T + L +PNP+ PP
Sbjct: 25 TPPLAVPATNTPPNPATTPTPLTPNPNPSPTLPP 58
>02_04_0435 +
22912993-22913456,22913847-22914012,22914096-22914146,
22914353-22914578,22915275-22915963,22916055-22916408
Length = 649
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 EPGPTESYLRHHPNPAMRAPPNHD-YRDTLMKQKV 253
E G E +R H PA RAP D YR ++ +KV
Sbjct: 190 EMGIEEDIIRKHTTPAYRAPEMWDLYRREVISEKV 224
>09_02_0207 -
5793848-5794276,5794523-5794645,5794742-5795250,
5795543-5795648,5795798-5795959,5796094-5796144,
5796229-5796394,5796624-5797093
Length = 671
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 EPGPTESYLRHHPNPAMRAPPNHD-YRDTLMKQKV 253
E G E +R H PA RAP D YR ++ +KV
Sbjct: 192 EMGIEEDNIRKHTTPAYRAPEMWDLYRREVISEKV 226
>09_01_0037 - 604001-604957
Length = 318
Score = 27.9 bits (59), Expect = 5.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 14 TSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAK-VRREPGPTESYLRHHP 190
TS+++SL+ + + DP P E V P + + P VR+EP L+ P
Sbjct: 202 TSLSLSLSLPGLDHPHPDPSTPSEPAVQLQPPPPSQMPPPTPSCVRQEPPQMPFQLQPPP 261
Query: 191 NPAMRAP 211
P AP
Sbjct: 262 PPRPSAP 268
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 205 PHCWVGVMTQVTLCGARLPSDLS 137
P+C GV T VT+ GA+ PS+ S
Sbjct: 198 PYCRNGVRTSVTVSGAQYPSNSS 220
>04_04_0347 + 24564589-24565296
Length = 235
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +2
Query: 77 PEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHD 223
P V+ P P + V+ P PT RH P +PP+ D
Sbjct: 141 PAPAVIHGTNSHLAPAPAPSSHVQYSPAPTPGDGRHQSPPPPPSPPSAD 189
>02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 244 FH--KGITVVVVRRCPHCWVGVMTQVTLCGARLPSDLSSREHERS 116
FH KGIT V +RRCP+ +T++++ G P +S H+ S
Sbjct: 1090 FHNLKGITWVNLRRCPN-----LTRISIDGFSQPHVMSKPVHDNS 1129
>08_01_0021 + 161613-162236
Length = 207
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 182 HHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSPLP 340
HHP + PP + L +Q +Q +SP + EQ A S PLP
Sbjct: 87 HHPTLLAQMPPQPSFPFHLQQQDAWPQQQHSPAAI--EQAAARSSGADLPPLP 137
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 38 PNFFPNGYQDPKHPEEEVVSNWPY-RTTPLVLPGAKVRREPGPTESYLRHHPNP 196
P + P G P HP +E P P +P + R GP + + H P P
Sbjct: 416 PPYPPGGNAPPHHPRQEPAPPHPTGGMPPYPMPSFRADRPMGPFD-MVDHRPPP 468
>07_01_0662 +
4972953-4973645,4973758-4974046,4974790-4974803,
4974848-4974856
Length = 334
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 65 DPKHPEEEVVSNWPYRT-TPLVLPGAKVRREPGPTESYLRHHPNP 196
DP P + S P TP + P + R P SYL P P
Sbjct: 162 DPAAPHYKTPSRGPSPVPTPALAPASPPRHRPASPPSYLARPPPP 206
>02_04_0037 + 19104367-19104978
Length = 203
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 226 VVVVRRCPHCWVGVMTQVTLCG 161
VVVV +C W GV+T + CG
Sbjct: 44 VVVVAKCRELWEGVLTAGSGCG 65
>01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038
Length = 202
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 382 LVVFVFEEGQVDKNRQ 335
L +F FEEGQ+++NR+
Sbjct: 181 LAIFCFEEGQIEENRR 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,001,006
Number of Sequences: 37544
Number of extensions: 306789
Number of successful extensions: 900
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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