Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30301
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.080
SB_58030| Best HMM Match : cIII (HMM E-Value=7.7)                      29   3.0  
SB_47875| Best HMM Match : rve (HMM E-Value=3.3e-16)                   28   5.3  
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   28   5.3  
SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_31266| Best HMM Match : PKI (HMM E-Value=1)                         27   6.9  
SB_14888| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_4754| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +2

Query: 11  PTSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPL-VLPGAKVRREPGPTESYLRHH 187
           P   T    P+  P   + P HP     S+ PY  T    L G +  REP P  S+  H 
Sbjct: 474 PHHATSYNAPSGMPTHREPPPHPS--FASHQPYHVTSCDALSGMQTHREPPPHPSFASHQ 531

Query: 188 P 190
           P
Sbjct: 532 P 532



 Score = 30.3 bits (65), Expect = 0.98
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 62  QDPKHPEEEVVSNWPYRTTPL-VLPGAKVRREPGPTESYLRHHP 190
           + P HP     S+ PY  T    L G +  REP P  S+  H P
Sbjct: 520 EPPPHPS--FASHQPYHVTSCDALSGMQTHREPPPHPSFASHQP 561


>SB_58030| Best HMM Match : cIII (HMM E-Value=7.7)
          Length = 167

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = -3

Query: 217 VRRCPHCWVGVMTQVTLCGARLPSDLSSREHERSGAVRPVADNFFFRMFRILVSVREEVG 38
           V + P    G+  +   C A +P  +++  H R    +P+   F+    +I ++V     
Sbjct: 63  VAKLPVRMFGIRYEEATCAAHVPCTINNSPHSRLNK-QPIPSRFYPVFDKIGLTVAGYQP 121

Query: 37  VERHCYTCR 11
             R CY C+
Sbjct: 122 GTRWCYRCK 130


>SB_47875| Best HMM Match : rve (HMM E-Value=3.3e-16)
          Length = 488

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 121 RSGAVRPVADNFFFRMFRILVSVREEVGVERHCYTCRYG 5
           ++ A  PVADNF  R  +I V +   + V +    CR G
Sbjct: 53  KNEATLPVADNFKDRFQQIQVEIEHMIAVLQQMELCRSG 91


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
 Frame = +2

Query: 68  PKHPEEEVVSNWPYRTTPLV----LPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDT 235
           P+ P      N P R  P V     P   +RRE G T+S+    P P  R P   D   +
Sbjct: 697 PQIPTRTGSVNKPSRAPPPVPNHPSPAVPLRRE-GDTKSFAPQRPPPPTRTPSGKDRPHS 755

Query: 236 LMKQKVLH 259
                 LH
Sbjct: 756 TTATPTLH 763


>SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 246 KRCCTSNSTLQSIYTRNRTLQTLS 317
           + CC + +TL+ I T  R LQT+S
Sbjct: 388 QHCCGNRATLEKILTFGRYLQTMS 411


>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4634

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 277  NQSILGTEHCKLYQAANFASAYFYRPVLPQTQT 375
            N + +G ++ +LYQ   F SAY   P   QTQT
Sbjct: 4193 NNATVGNDYVQLYQIVRFPSAY-PTPAGGQTQT 4224


>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
          Length = 1507

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 24/81 (29%), Positives = 34/81 (41%)
 Frame = +1

Query: 4   VHTYKCNNVAQPQLLPERIPGS*TS*RRSCQQLAVPHHSSRAPGS*GPKGAWPHRELPAS 183
           ++T++ N   +   +P R P   T+ + S      P  S       GP    P R+ P S
Sbjct: 385 LNTFRNNIRNRKDSMPPRPPKPSTNGQASVDGQLKPPSSPSPRRQTGPPSPKPSRQPPPS 444

Query: 184 SPQPSNEGTS*PRLP*YPYET 246
           SPQ     T   R P + YET
Sbjct: 445 SPQ-RIAPTPGHRRPVFMYET 464


>SB_14888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 255 CTSNSTLQSIYTRNRTL--QTLSGSKLRLCLFLSTCPSSNTN 374
           C   S+ Q++ T N TL  Q +SG++ R+   +  CP   TN
Sbjct: 308 CAICSSTQNL-TSNATLVYQAISGNRTRVAALVVKCPQRKTN 348


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 50  PNGYQDPKH-PEEEVVSNWPYRTTPLVLPGAKVRREPGP 163
           P+ +  P+H P+ E +    Y++TP+  P  K R  P P
Sbjct: 432 PDSHALPQHTPQGEDLGQAAYQSTPISKPSVKSRLGPRP 470


>SB_4754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 850

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
 Frame = +2

Query: 50  PNGYQDPKHPEEEVVSNWPYRTTP---LVLPGAKVRREPGPTESYLRHHPNPAMRAPPNH 220
           P  Y+ P  P +      P+  TP   + +    + R    T +   HH  P M+ PP  
Sbjct: 281 PPAYRRPPRPPK-----LPFGCTPENNVKMRAWLLERYASSTFNTCPHHALPCMKGPPVE 335

Query: 221 DYRDTLMKQKVLHKQFNSPIN 283
            + D     K  H   N P++
Sbjct: 336 IHVDPTATPKACHTPANIPLH 356


>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 160 PHRELPASSPQPSNEGTS 213
           PH+  P   PQP NEG S
Sbjct: 268 PHQPAPGIPPQPMNEGNS 285


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 206 APPNHDYRDTLMKQKVLHKQFNSPINLYSEQNI 304
           +PP HD++DT+  ++    + +S   L  ++NI
Sbjct: 796 SPPKHDFQDTISSRRTDFLETDSQSRLDGKENI 828


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,129,333
Number of Sequences: 59808
Number of extensions: 340377
Number of successful extensions: 957
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)