Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30301
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive exp... 31 0.35
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 31 0.35
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 31 0.35
At5g39520.1 68418.m04785 expressed protein predicted protein, Sy... 29 1.4
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family... 29 1.4
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 2.5
At5g38060.1 68418.m04586 expressed protein ; expression support... 28 4.3
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr... 28 4.3
At1g12970.1 68414.m01506 leucine-rich repeat family protein 27 5.7
At4g21550.1 68417.m03113 transcriptional factor B3 family protei... 27 7.5
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 27 7.5
At5g62270.1 68418.m07818 expressed protein 27 9.9
At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family pr... 27 9.9
At1g17130.1 68414.m02087 cell cycle control protein-related cont... 27 9.9
>At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive
expressor of Pathogensis Related genes 5 (cpr5);
regulator of disease resistance and senescence (Plant J.
(2001)26(4)409-420.
Length = 564
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 342 FLSTCPSSNTNTTKRVNACINRFRAPR*LNVLR 440
+ ST +SN+N+TKRV ++R R P L + R
Sbjct: 72 YCSTSSTSNSNSTKRVTRVVHRLRNPMRLGMAR 104
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 31.5 bits (68), Expect = 0.35
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 182 HHPNPAMRAPPNHD--YRDTLMKQKVLHKQFNSPINLYSEQ 298
H+P P M+ PP HD Y M+Q + KQ + I+ Y +
Sbjct: 400 HNPPPYMQPPPRHDSYYPPPEMRQPPMEKQPHQGISAYGRE 440
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 367 TQTRLN-V*TRALTASAPPAN*TSCGVESNVFCRYDCVAPANRLNTNL 507
TQTRL V + + +APP+N N+FC + PAN N+NL
Sbjct: 169 TQTRLGKVFSDIVAITAPPSNNNQTEASGNLFCPFS-PTPANVENSNL 215
>At5g39520.1 68418.m04785 expressed protein predicted protein,
Synechocystis sp., PIR:S77152
Length = 230
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 370 VFEEGQVDKNRQRRSLLPDRVCNVLFRV*IDWRVELLVQHLLFHKGITVVVVR-RC 206
+F+E DK+R ++ PD+ N +WR+++L F VVV+R RC
Sbjct: 56 LFDEYLEDKSRVFEAMFPDKPKNYRLNE-EEWRIQMLPIKFFFLTACPVVVMRIRC 110
>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 310
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 100 LAVPHHSSRAPGS*GPKGAW--PHRELPASSPQPSNEGTS*P 219
+A P +S P P A PH++ P S PQP+N + P
Sbjct: 1 MATPSPTSSPPSDSNPNSAATPPHQKQPPSPPQPTNPSSPPP 42
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 50 PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 214
P+ P+ P+E N PY +P+ K RR P P + P+P PP
Sbjct: 463 PSPVHKPQPPKESPQPNDPYDQSPV-----KFRRSPPPPPVHSPPPPSPIHSPPP 512
>At5g38060.1 68418.m04586 expressed protein ; expression supported
by MPSS
Length = 134
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 243 NKRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCLFLSTCPSSNTNTTKRVNACIN 404
N + +S+ ++ + +L+TL KL F S C +S+++ K + C N
Sbjct: 7 NFQLSSSSFSIPKTLIHSHSLKTLKTPKLNSRQFFSQCTASSSDGPKTLRTCKN 60
>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 393
Score = 27.9 bits (59), Expect = 4.3
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 80 EEEVVSNWPYRTTPLVLPGAKVRREPGPTE-SYLRHHPNPAMRAPPNHDYRDTLMKQKVL 256
+ E + P TTP LP KVR+E + + L+ +P + ++ + K L
Sbjct: 260 DNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFL 319
Query: 257 HKQFNSPINLYSEQNIANSIRQQTS 331
H Q Y +Q +N +QQ S
Sbjct: 320 HDQVTVLSTPYMKQGASNQQQQQIS 344
>At1g12970.1 68414.m01506 leucine-rich repeat family protein
Length = 464
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 161 PTESYLRHHPNPAMRAPPN 217
P SY+ HH +PA APP+
Sbjct: 9 PLLSYVLHHSDPASHAPPS 27
>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
low similarity to SP|Q01593 Abscisic acid-insensitive
protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
protein homolog {Oryza sativa}; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 721
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 254 LHKQFNSPINLYSEQNIANSIRQQTSPLPIFIDLSFLKHKHD 379
L +Q NS L+ N + + + SPL + +DL+F K +
Sbjct: 620 LLEQLNSDNGLHQSANNSENHERHASPLKVQLDLNFKPEKDE 661
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 258 TSNSTLQSIYTRNRTLQTLSGSKLRLCLFLSTCPSSNTNTT 380
T L+++ N L+TL + ++CL LST NT T
Sbjct: 814 TKLRNLKTLELNNTGLKTLPSALFKMCLQLSTLGLHNTEIT 854
>At5g62270.1 68418.m07818 expressed protein
Length = 383
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +1
Query: 82 RRSCQQLAVPHHSSRAPGS*GPKGAWPHRELPASSPQPSNE 204
RRS + + A G G G W LP S +P NE
Sbjct: 326 RRSSEGWKITVEKLGAKGKRGAGGGWKFMSLPDGSSRPLNE 366
>At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 347
Score = 26.6 bits (56), Expect = 9.9
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +2
Query: 80 EEEVVSNWPYRTTPLVLPGAKVRREPGPTE-SYLRHHPNPAMRAPPNHDYRDTLMKQKVL 256
+ E + P TTP LP KVR+E + + L+ +P + ++ + K L
Sbjct: 260 DNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFL 319
Query: 257 HKQFNSPINLYSEQNIANSIRQQ 325
H Q Y +Q +N +QQ
Sbjct: 320 HDQVTVLSTPYMKQGASNQQQQQ 342
>At1g17130.1 68414.m02087 cell cycle control protein-related
contains similarity to Swiss-Prot:Q9P7C5 cell cycle
control protein cwf16 [Schizosaccharomyces pombe]
Length = 331
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/37 (24%), Positives = 24/37 (64%)
Frame = +2
Query: 62 QDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTES 172
++PK P+++ +S P+++ + + ++++P PT S
Sbjct: 264 ENPKEPKKQAISKQPFKSVHIKV----IKKQPQPTSS 296
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,919,629
Number of Sequences: 28952
Number of extensions: 234580
Number of successful extensions: 656
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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