Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30298
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 62 6e-11
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 57 1e-09
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 27 1.3
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 1.7
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 26 2.9
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 2.9
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 3.8
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 5.1
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 5.1
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 6.7
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 6.7
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 6.7
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 25 8.9
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 8.9
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.9
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.9
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 61.7 bits (143), Expect = 6e-11
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Frame = +3
Query: 180 KKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYY-ENSYEPKVLITYSDNPH 356
+ IP T+E+ R DET++ + + EE Q +++ DE S Y+ E PK+L+T S
Sbjct: 49 ENIPATIESKRVYDETII---EDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRAS 105
Query: 357 SKTRIFGRELTRIIPNSLSRYRQRS-SVKRIVQSAIREDVTDVIIINENQRQPN 515
K F EL PN+ R R V I ++A + TD++++NE++++ N
Sbjct: 106 RKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTN 159
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 57.2 bits (132), Expect = 1e-09
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 13/107 (12%)
Frame = +3
Query: 234 VNADTEEQEEAQKDMELDE-------LSTYYENSY------EPKVLITYSDNPHSKTRIF 374
+N D +E + QKD + DE T ++ Y EPKVL+T S P S+ F
Sbjct: 42 LNKDLQEDSQLQKDYKYDESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQF 101
Query: 375 GRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPN 515
+E+ +IPNS R V +V++A D+TD++I++E++ P+
Sbjct: 102 AKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPD 148
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 ENSYEPKVLITYSDNPHSKTRIFGREL-TRIIPNSLSRYRQRSS 434
+ +YE + + D S RIF RE+ TRI L +Y RSS
Sbjct: 443 QGAYENRTIFETLDLAWSLLRIFPREMLTRIPKKILDQYYSRSS 486
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = +3
Query: 171 DVPKKIPHTLETLRE-KDETMLVNA--DTEEQEEAQKDMELDELSTYYENSYEPKVLITY 341
D+ K + + TLR +DE L ++ +A + + T Y+ + LIT
Sbjct: 464 DLQKSLIEHVRTLRRIEDEITLTKMWISIAKESDAMSGHNIKSVETRLAKLYDQRSLITA 523
Query: 342 SDNPHSKTRIFGRELTRII 398
NP + F ++ I+
Sbjct: 524 KVNPEEICKTFQNSISHIV 542
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 104 LYFMQLK*CFLNSLKNKLVSWYTYQKLDYIN 12
++F + F+N +K+K +S T+ LDYI+
Sbjct: 122 IFFRYIVRQFVNGIKSKYLSKETFLNLDYID 152
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 283 LMNFQHTMRIRMSQKC*SHTLIIHTVKLEYSEEN*LG--LYLILY 411
L+N +H M ++M+ C S TL+ EY N G LY +L+
Sbjct: 2059 LLNLEHRMMLQMAPDCDSLTLLQKLEVFEYVMANTDGYDLYHVLW 2103
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 174 VPKKIPHTLETLR-EKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDN 350
+P ++P L+ + + E+ +A E E D ++ LS YY +E K ++
Sbjct: 504 IPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGKDSKKFTLV 563
Query: 351 PHSKTRIFGR 380
H +FGR
Sbjct: 564 KHFMNSLFGR 573
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.4 bits (53), Expect = 5.1
Identities = 7/24 (29%), Positives = 18/24 (75%)
Frame = -2
Query: 74 LNSLKNKLVSWYTYQKLDYINXSE 3
+N ++++L +WY ++ +DY++ E
Sbjct: 1001 INFIEHELDNWYHHRNIDYVDLLE 1024
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +3
Query: 168 DDVPKKIPHTLETLREK-DETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYS 344
D++ +++ + L EK DE + EE+E + E +E S+Y + +L
Sbjct: 295 DELSEELDVAQDLLTEKEDEIATLKRQIEEKENSSSAFENEENSSYVHLQEDYAILQAKC 354
Query: 345 DNPHSKTRIFGRELTRIIPNSLSRYRQRS 431
D + ++ +L + N + + S
Sbjct: 355 DEFADRIQVLTADLEKEKENQIMHESEAS 383
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.0 bits (52), Expect = 6.7
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +3
Query: 201 ETLREKDE--TMLVNADTE----EQEEAQKDMELDELSTYYENSYEPKVLITYSDNP 353
E L +K E T + D E Q+E +M LS Y+ P ++YS NP
Sbjct: 819 EELNDKFEEYTYTIGIDPEFTQMNQQELLAEMICQRLSRGYQIVVNPAAAVSYSGNP 875
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 177 PKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEP 323
P + +LE+L + M + D+E +EA + + LD+ Y+++ EP
Sbjct: 327 PTQEQDSLESLGPIIDDMDTDMDSEVGKEASRGVRLDDF-YYFDDEEEP 374
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 159 QEGDDVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDM 278
+E D V + IP E LRE+ +L + EE + QK++
Sbjct: 696 EEVDLVSEPIP---EPLRERQSQLLYEIEAEECQNKQKEL 732
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 222 HLFHEEFPTCEGFS*VHHLPLVSFLTCVF 136
H FH+ F T EGF L F T F
Sbjct: 670 HAFHQAFRTLEGFEWEDDLANARFFTRFF 698
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 171 DVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDME 281
DV +I REK+E +L N T E D+E
Sbjct: 265 DVRSRIERAARQAREKNEKLLQNVKTSEIPINAADLE 301
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 453 SAIREDVTDVIIINENQRQPN 515
S + ED +++I ++EN + PN
Sbjct: 362 SVVAEDGSEIITLDENDQSPN 382
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 271 KIWNLMNFQHTMRIRMSQKC*SHTLIIHTVKLEYSEEN*LGLY 399
K W + NF +S ++ L+I +Y+ E L LY
Sbjct: 316 KAWEVFNFMKFTATSISPSAETYGLMIQICSSQYNPEKALDLY 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,070
Number of Sequences: 5004
Number of extensions: 38051
Number of successful extensions: 169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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