Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30298
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0270 - 2001569-2001589,2001852-2001980,2002966-2003055,200... 61 6e-10
08_01_0360 - 3160723-3160821,3160911-3160995,3161099-3161205,316... 54 5e-08
11_06_0289 - 21969248-21973516 33 0.14
03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421 32 0.31
11_06_0185 + 21018045-21022307 31 0.55
03_06_0367 - 33413530-33413710,33414347-33414681,33414908-334150... 28 3.9
02_01_0353 + 2545982-2549833 28 5.1
01_07_0105 - 41104655-41104851,41105818-41107150 28 5.1
11_06_0671 + 26099292-26099491,26099589-26099622,26104787-261048... 27 8.9
11_06_0003 - 19155407-19155953,19156114-19156148 27 8.9
04_03_0892 + 20596107-20596682,20597219-20597251,20597794-205978... 27 8.9
03_01_0630 + 4635297-4636220 27 8.9
>06_01_0270 -
2001569-2001589,2001852-2001980,2002966-2003055,
2003361-2003466,2003985-2004064,2005895-2005977,
2006057-2006126,2006208-2006291,2006445-2006540,
2007555-2007635,2007844-2007999
Length = 331
Score = 60.9 bits (141), Expect = 6e-10
Identities = 35/112 (31%), Positives = 57/112 (50%)
Frame = +3
Query: 180 KKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHS 359
K +P T+E RE DET+ + +E + DE + + PKVLIT
Sbjct: 56 KLVPRTIENTREPDETVC----RPDDQELFAGNDADEFNAVLKQQTTPKVLITTCRFNSG 111
Query: 360 KTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPN 515
+ F EL ++IPNS R +K+IV+ A D T +++++ N+R+P+
Sbjct: 112 RGPAFIEELMQVIPNSCYVKRGTYELKKIVEYANNRDFTSLVVVHTNRREPD 163
>08_01_0360 -
3160723-3160821,3160911-3160995,3161099-3161205,
3163066-3163155,3163265-3163408,3163572-3163622,
3163735-3163844,3163928-3164123
Length = 293
Score = 54.4 bits (125), Expect = 5e-08
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = +3
Query: 159 QEGDDVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSY-EPKVLI 335
+E D K IP LR ++ + D E+++ A +D+ Y + EPK+L+
Sbjct: 33 REALDEGKPIP---TELRNEELALRREIDLEDKDSAVPRSLIDD--EYAGAALREPKILL 87
Query: 336 TYSDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPN 515
T S NP + F +EL + PNS R + IV+S D+TD+++++E++ QP+
Sbjct: 88 TTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCRSHDITDLVLVHEHRGQPD 147
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +3
Query: 213 EKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKT----RIFGR 380
+ DE + D EE+EE D + +E +E+ YE + ++ N SK ++
Sbjct: 517 DNDEDSNDDDDDEEEEEEDDDDDEEEPIHLHEDQYEQILREVFTKNASSKAQEQDKLVAE 576
Query: 381 ELTRIIPNSLSRYRQRSSVKRIVQSAIRE 467
+ T+ +L R + + Q +RE
Sbjct: 577 QATKTAATTLDEERIKQMINEAKQDVLRE 605
>03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421
Length = 927
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 177 PKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDE 290
P + P LE+L E D T ++TE++EEA LD+
Sbjct: 464 PDEQPLPLESLHETDPTAQEASETEQEEEATASQRLDQ 501
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 31.1 bits (67), Expect = 0.55
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +3
Query: 243 DTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKT----RIFGRELTRIIPNSL 410
D +E+EE + D + +E +E+ YE + ++ N SK ++ + T+ +L
Sbjct: 525 DDDEEEEEEDDDDEEEPIHLHEDQYEQILREVFTKNASSKAQEQDKLVAEQATKTAATTL 584
Query: 411 SRYRQRSSVKRIVQSAIRE 467
R + + Q +RE
Sbjct: 585 DEERIKQMINEAKQDVLRE 603
>03_06_0367 -
33413530-33413710,33414347-33414681,33414908-33415023,
33415107-33415235,33415657-33415723,33415780-33415854,
33416054-33416149,33416404-33416592
Length = 395
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 207 EFPTCEGFS*VHHLPLVSF---LTCVFFYPFHEPFCTFIFYA 91
E P+ F VHH L SF L+CV PF+ F +F++
Sbjct: 55 ETPSIVRFQKVHHKLLDSFFSVLSCVVSVPFYTGFLPLLFWS 96
>02_01_0353 + 2545982-2549833
Length = 1283
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +3
Query: 171 DVPKKIPHTLETLREKDET---MLVNADTEEQ--EEAQKDMELDELSTYYENSYEPK 326
DVPK++P L ++ +D L+N + EEQ E QK+ ++ +L +N P+
Sbjct: 433 DVPKELPGGLPLMKPEDYQYFGTLLNEEEEEQLSPEEQKERKIMKLLLKVKNGTPPQ 489
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 207 LREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKV 329
+ E++E ++V+ +TEE+EE + DE++ E KV
Sbjct: 380 VEEEEEKIIVSQETEEEEEKSAVISRDEITKVEVEREEIKV 420
>11_06_0671 +
26099292-26099491,26099589-26099622,26104787-26104813,
26105557-26105642,26105735-26105783,26105969-26106018,
26106692-26107185,26107379-26107539,26107808-26108017,
26108100-26108292,26108367-26108444,26108555-26108649,
26109158-26109280
Length = 599
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 85 FSCIKYKSTKWLVERIKK-NAS*KRNKREMMYLRKSLTRWKLFVKKMRRCSL 237
F +K+ + + +K N + K+ + E L K+ WK VK R+C L
Sbjct: 340 FDWLKHNGINTVEDMLKALNKNEKKIRTECFKLEKNSKDWKETVKHARKCDL 391
>11_06_0003 - 19155407-19155953,19156114-19156148
Length = 193
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +3
Query: 165 GDDVPKKIPHTLETLRE---KDETMLVNADTEEQEEAQKDMELDE 290
G+ K++P+ + E +DE +V A+ EE+EE +++ E +E
Sbjct: 24 GEIPSKQVPNQVTVRDEVVSRDEDFMVVAEEEEEEEEEEEEEEEE 68
>04_03_0892 +
20596107-20596682,20597219-20597251,20597794-20597881,
20597966-20598447,20598545-20598811,20598881-20599230,
20599330-20599861
Length = 775
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 64 NEFKKHYFSCIKYKSTKWLVERIKK 138
NEF K + +C+ YK+++ V R+K+
Sbjct: 634 NEFFKSFPNCLTYKTSEEFVARVKE 658
>03_01_0630 + 4635297-4636220
Length = 307
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 207 LREKDETMLVNADTEEQEEAQKDM 278
+ +KDE + D EE+EE +DM
Sbjct: 1 MEQKDEAEMEEVDEEEEEEVDEDM 24
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,967,559
Number of Sequences: 37544
Number of extensions: 196834
Number of successful extensions: 649
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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