Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30298
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 3e-09
SB_41818| Best HMM Match : Brix (HMM E-Value=0.015) 56 1e-08
SB_8855| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_8939| Best HMM Match : EBV-NA3 (HMM E-Value=8.2) 33 0.18
SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6) 30 1.3
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 30 1.3
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72) 29 1.7
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_29237| Best HMM Match : I-set (HMM E-Value=0) 29 2.3
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1) 29 3.0
SB_2411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13) 28 5.3
SB_17697| Best HMM Match : JmjC (HMM E-Value=2.4e-11) 28 5.3
SB_41955| Best HMM Match : RVT_1 (HMM E-Value=5.3e-15) 27 6.9
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 27 6.9
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_48724| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 58.4 bits (135), Expect = 3e-09
Identities = 35/118 (29%), Positives = 64/118 (54%)
Frame = +3
Query: 162 EGDDVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITY 341
EG +P ++ LRE + D E+ E+ ++ DE + + +PK++IT
Sbjct: 69 EGKAIPTELRKDEAELREA-----IEFDDEKHEKVGSHID-DEYA--WAGVEDPKIMITT 120
Query: 342 SDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPN 515
S NP S+ + F +E+ + PNS R +K++V + DVTD+II++E++ +P+
Sbjct: 121 SHNPSSRLKQFAKEMRLVFPNSQRLNRGNYVMKQLVDACKANDVTDLIIVHEHRGEPD 178
>SB_41818| Best HMM Match : Brix (HMM E-Value=0.015)
Length = 170
Score = 56.4 bits (130), Expect = 1e-08
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Frame = +3
Query: 165 GDDVP-KKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITY 341
GD+ P K++P T+E R +DETM+ D EE +D DELS Y++ PKVLIT
Sbjct: 49 GDEAPPKQVPRTIENTRVQDETMVDPLD----EEVLQDESTDELSYYFKREVTPKVLITS 104
Query: 342 SDNP-HSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIRED 470
SD P H ++ + I+ N +R SV R++ + D
Sbjct: 105 SDRPKHGHGKMTSHKPELILNNFNTRLGH--SVARVLAALFPYD 146
>SB_8855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 171 DVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPK 326
D PK++ T +T +KD+ M V A + + +QKD + L+T Y +S + K
Sbjct: 243 DKPKEVLATGDTHSQKDKPMEVLATGDTRHTSQKDKPKEVLATGYTHSQKDK 294
>SB_8939| Best HMM Match : EBV-NA3 (HMM E-Value=8.2)
Length = 236
Score = 32.7 bits (71), Expect = 0.18
Identities = 11/41 (26%), Positives = 27/41 (65%)
Frame = +3
Query: 159 QEGDDVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDME 281
+E ++ +++P +E + + + ++V +DT E+EE ++ ME
Sbjct: 188 EEDEEATEEMPEVVEVIPKAKKLVVVESDTSEEEEEEESME 228
>SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6)
Length = 388
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -1
Query: 258 LVPRCQH*RASSHLFHEEFPTCEGFS*VHHLPLVSFLTCVFF--YPFHEPFCTFIFYATK 85
L+P+C S H+ H E+ TC +S H+ + TC + + H +CT Y+
Sbjct: 74 LLPQCTE--YSEHMIHHEWCTCTEYS--EHMIHHEWCTCTEYSEHMIHHEWCTCTEYSEH 129
Query: 84 VV 79
++
Sbjct: 130 MI 131
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 228 SSHLFHEEFPTCEGFS*VHHLPLVSFLTCVFF--YPFHEPFCTFIFYATKVV 79
S H+ H E+ TC +S H+ + TC + + H +CT Y+ ++
Sbjct: 127 SEHMIHHEWCTCTEYS--EHMIHHEWCTCTEYSEHMIHHEWCTCTEYSEHMI 176
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 228 SSHLFHEEFPTCEGFS*VHHLPLVSFLTCVFF--YPFHEPFCTFIFYATKVV 79
S H+ H E+ TC +S H+ + TC + + H +CT Y+ ++
Sbjct: 172 SEHMIHHEWCTCTEYS--EHMIHHEWCTCTEYSEHMIHHEWCTCTEYSEHMI 221
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 228 SSHLFHEEFPTCEGFS*VHHLPLVSFLTCVFF--YPFHEPFCTFIFYATKVV 79
S H+ H E+ TC +S H+ + TC + + H +CT Y+ ++
Sbjct: 217 SEHMIHHEWCTCTEYS--EHMIHHEWCTCTEYSEHMIHHEWCTCTEYSEHMI 266
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 159 QEGDDVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYY--ENSYEP 323
+E + PKK L+ +E++E L A + Q+EAQK++ S+ Y +SY P
Sbjct: 320 KESQEPPKKNERDLQE-QEEEELQLAMALSLSQDEAQKEVRPSPKSSLYGSPDSYSP 375
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 201 ETLREKDETMLVNADTEEQEEAQKDMELDELSTYYEN 311
ETL+EK E + EE++E +K + + Y+E+
Sbjct: 809 ETLKEKQERLKAKKKEEEEKELEKRSKTKDAKKYFES 845
>SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)
Length = 529
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +3
Query: 210 REKDETMLVNADTEEQEEAQKDMELDELST 299
+EKDE LVN DT AQ+D+E+ LST
Sbjct: 321 KEKDEKQLVNNDT-----AQEDVEISSLST 345
>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 237 NADTEEQEEAQKDMELDELSTYYENSYE-PKVLITYSDNPHSKTRIFGRELTRIIPNSLS 413
N D ++ EE + +D S+ N++ P + S++ H+ R ELT+ ++
Sbjct: 132 NQDKKKSEEPPEYEVVDGDSSQSSNTFSGPSSISEPSESSHADKRNRSGELTQSQNDNKE 191
Query: 414 RYRQRSSVKRIVQS 455
+ RQR V + V+S
Sbjct: 192 KKRQRKEVGKSVES 205
>SB_29237| Best HMM Match : I-set (HMM E-Value=0)
Length = 869
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 210 REKDE-TMLVNADTEEQEEAQKDMELDELST 299
++KD+ T VN D E EEAQ D+ L ++T
Sbjct: 723 QKKDQLTTPVNGDVENDEEAQDDLALQPINT 753
>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 171 DVPKKIPHTLETLREKDETMLVNADTEE 254
D K PHT TLRE++ T + A+TEE
Sbjct: 548 DTVNKEPHTA-TLRERNTTRQIRAETEE 574
>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
Length = 256
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 267 QKDMELDELSTYYENSYEPKVLITYSDNPHSKTRIFGRELTRIIPNSLSRYRQRS 431
+KD +LD+ + NSY PK D P + ++ R+ +R P S SR R+R+
Sbjct: 170 RKDRQLDKKTKTLPNSYAPK-----RDKPRERKKV-ARDRSR-SPRSRSRSRERT 217
>SB_2411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 159 QEGDDVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKV 329
Q D K+I L R+ + M E+ E D +LDEL Y + PKV
Sbjct: 114 QMADTAAKRIGKVLNINRDNERMM------EDYERLASDRKLDELRNYRKGEKPPKV 164
>SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)
Length = 752
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +3
Query: 189 PHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHS 359
P ++ ++ N DT++ E + +LS + S L++YS NP+S
Sbjct: 596 PMSMSAFDKQKPGTSANDDTKQDERVRHSYHAGDLSEHAPLSRSQTSLLSYSPNPNS 652
>SB_17697| Best HMM Match : JmjC (HMM E-Value=2.4e-11)
Length = 1054
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 162 EGDDVPKKIPHTL-ETLREKDETMLVNADTEEQEEAQKDMELDE 290
EG DVP K P T+ E ++EK + + E +++ K E E
Sbjct: 65 EGQDVPNKEPMTVKELIKEKIRSRETSRTKSEGQDSPKPAEAQE 108
>SB_41955| Best HMM Match : RVT_1 (HMM E-Value=5.3e-15)
Length = 962
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 282 LDELSTYYENSYEPKVLITYSDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQS 455
+ +LS Y++ + L+TYS+N K ++ + + RY+ SS ++ +S
Sbjct: 311 VSKLSIKYQDLRQSSTLMTYSENGEGKVQLVWYSVLMRNKRDIKRYKFNSSDQKESES 368
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/79 (18%), Positives = 36/79 (45%)
Frame = +3
Query: 279 ELDELSTYYENSYEPKVLITYSDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSA 458
+LD ++S+ P + ++ + + R T + + +Y+QR K +QS
Sbjct: 206 KLDHSDPVLDSSFTPLMTLSPENRRQNNATSSTRPSTCKTNSYVRKYKQRKGKKFEIQSY 265
Query: 459 IREDVTDVIIINENQRQPN 515
+ + D++ + E + P+
Sbjct: 266 LEIEQPDIVALPETKIDPS 284
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = +3
Query: 162 EGDDVPKKIPHTLETL----REKDETMLVNADTEE---QEEAQKDMELDELSTYYEN 311
E DD+ K+ T ETL +ET ++TE+ E +++D ++EL T EN
Sbjct: 3146 ERDDLKAKLEETEETLASTKENLEETSTKLSETEKLRSSEVSERDSSIEELRTNNEN 3202
>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 905
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/84 (23%), Positives = 31/84 (36%)
Frame = +3
Query: 219 DETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKTRIFGRELTRII 398
DE N D + +++ S + Y+PK T PH I G L + +
Sbjct: 187 DENTKSNIDFKNYSYSERPTSAPPASGFVPRLYDPKTFATVLKAPHGSVPIPG--LAQFV 244
Query: 399 PNSLSRYRQRSSVKRIVQSAIRED 470
S +SV + VQ + D
Sbjct: 245 DKVTSSVPVAASVMKGVQVLAKRD 268
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 217 KMRRCSLMLTPRNKRRHKKIWNLMNFQHTMRIRMSQKC*SHTLI-IHTVKLEYSEEN*LG 393
K + C ++ +P + + ++ +N M+ +H MR +K H L+ + + ++ + N LG
Sbjct: 172 KNQNCRILSSPEARHKRRR-YNSMDDKHPMRAMSPRKSKDHALLAMASANMKNNHFNFLG 230
Query: 394 L 396
+
Sbjct: 231 M 231
>SB_48724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +3
Query: 240 ADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKTR 368
++ E+++ Q+D+E + N+ E ++L+T S+ H +T+
Sbjct: 48 SEEEQKQSEQEDLEQQLNKIHPHNTGEHQILVTPSNGMHVQTK 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,475,159
Number of Sequences: 59808
Number of extensions: 255704
Number of successful extensions: 935
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -