Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30298
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.61 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   3.3  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   4.3  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   4.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 291 LSTYYENSYEPKVLITYSDNPHSKTRIFGRELTRIIPNSLSRYRQRS 431
           +S+Y+ NSY P +     ++PH   + +G  +   +P      +Q+S
Sbjct: 1   MSSYFANSYIPDLRNGGVEHPHQHQQHYGAAVQ--VPQQTQSVQQQS 45


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 243 DTEEQEEAQKDMELDEL 293
           +TEE+EE  K ++LD +
Sbjct: 319 ETEEEEENDKKLDLDSI 335


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +3

Query: 255 QEEAQKDMELDELSTYYENSYEPKVLIT-YSDNPHSKTRIFG--RELTRIIPNSLSRYRQ 425
           +E  +KD + ++L    E   E +     YS +   + + +   RE  +    S  R+R 
Sbjct: 243 REYRKKDRQYEKLHNEKEKFLEERTSHKRYSRSREREQKSYKNEREYRKYRETSKERFRD 302

Query: 426 RSSVKRIVQSAIREDVTDVIIINEN 500
           R   +R  +S I   +++  I N N
Sbjct: 303 RRERERSKESKIISSLSNKTIHNNN 327


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 375 GRELTRIIPNSLS 413
           GREL +I+P++LS
Sbjct: 57  GRELKKILPDALS 69


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 375 GRELTRIIPNSLS 413
           GREL +I+P++LS
Sbjct: 57  GRELKKILPDALS 69


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = -1

Query: 153 FLTCVFFYPFHEPFCTFIFYATKVV 79
           F+TC+F + +  P    I + ++++
Sbjct: 220 FVTCIFIWAYVIPLIFIILFYSRLL 244


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 190 LTRWKLFVKKMRRCSLMLTPRNKRRHKKIWNLMN 291
           +T W +  K M    ++  P  K   KK   LMN
Sbjct: 671 VTNWYMGWKGMLSEKILAEPLVKEHFKKALELMN 704


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = -1

Query: 153 FLTCVFFYPFHEPFCTFIFYATKVV 79
           F+TC+F + +  P    I + ++++
Sbjct: 220 FVTCIFIWAYVIPLIFIILFYSRLL 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,086
Number of Sequences: 438
Number of extensions: 2643
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)