Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30298
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g01560.1 68417.m00202 brix domain-containing protein contains... 68 3e-12
At1g63780.1 68414.m07218 brix domain-containing protein contains... 55 3e-08
At1g51900.1 68414.m05850 hypothetical protein 29 2.5
At1g34350.1 68414.m04264 expressed protein 29 2.5
At2g26570.1 68415.m03187 expressed protein contains Pfam profile... 28 3.2
At5g59610.1 68418.m07469 DNAJ heat shock N-terminal domain-conta... 27 5.7
At1g23600.1 68414.m02972 expressed protein contains Pfam profile... 27 5.7
At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 27 7.5
At4g03820.2 68417.m00529 expressed protein 27 7.5
At4g03820.1 68417.m00528 expressed protein 27 7.5
At3g09290.1 68416.m01103 zinc finger (C2H2 type) family protein ... 27 7.5
At1g03550.1 68414.m00336 secretory carrier membrane protein (SCA... 27 7.5
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 27 9.9
At1g23520.1 68414.m02956 expressed protein contains Pfam profile... 27 9.9
>At4g01560.1 68417.m00202 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 343
Score = 68.1 bits (159), Expect = 3e-12
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +3
Query: 165 GDDVPKK-IPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITY 341
G++ P+K IP T+E RE DET+ + EE D++ DE + PKVL+T
Sbjct: 78 GEEPPQKMIPKTIENTRESDETVC----RPDDEELFADIDADEFNPVLRREIAPKVLLTT 133
Query: 342 SDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPN 515
++ EL +IPNS + R +K+IV+ A ++D T +I+++ N+R+P+
Sbjct: 134 CRFNSTRGPALISELLSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPD 191
>At1g63780.1 68414.m07218 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 294
Score = 54.8 bits (126), Expect = 3e-08
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Frame = +3
Query: 159 QEGDDVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYE--PKVL 332
QEG +P ++ + LR++ D E+Q A +D+ Y N+ E PK+L
Sbjct: 37 QEGKPIPTELRNVEAKLRQE-------IDLEDQNTAVPRSHIDD---EYANATEADPKIL 86
Query: 333 ITYSDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQP 512
+T S NP + F +EL + PNS R + I+++A D TDVI+++E++ P
Sbjct: 87 LTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQVISEIIETARSHDFTDVILVHEHRGVP 146
Query: 513 N 515
+
Sbjct: 147 D 147
>At1g51900.1 68414.m05850 hypothetical protein
Length = 774
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 180 KKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYE 320
KK H+LE LR + + EE+E+ D ++D +S Y E+ +E
Sbjct: 253 KKSGHSLEILRPESKPETEKEVNEEEEKRVMDPDVD-ISCYEESPHE 298
>At1g34350.1 68414.m04264 expressed protein
Length = 163
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 353 WIIRVCDQHFWLIRILIVC*KFIKFHIFLCLLLFLGVSINEH 228
WI+ + H L+ + ++ + + FH+FL LL GV E+
Sbjct: 50 WIMGLMAFHALLLLVTLLSRRHLNFHMFLFLLALAGVYFAEN 91
>At2g26570.1 68415.m03187 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
weak similarity to merozoite surface protein 3 alpha
(GI:27596802) [Plasmodium vivax]
Length = 807
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +3
Query: 183 KIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEP 323
K+ + ++ + +ET DTEE +++Q D Y ++++ P
Sbjct: 40 KVDNIPQSQTDTEETQQSQTDTEETQQSQTDDTTGNAKIYVDDTFSP 86
>At5g59610.1 68418.m07469 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9UXR9 Chaperone
protein dnaJ (Heat shock protein 40 Methanosarcina
thermophila, SP|Q9QYI6 DnaJ homolog subfamily B member 9
Mus musculus; contains Pfam profile PF00226 DnaJ domain
Length = 268
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 201 PTCEGFS*VHHLPLVSFLTCVFFYPFHEPFCTF 103
PT + F HHLP +SFL + F F C +
Sbjct: 10 PTPQSFFLSHHLPPISFLYRINFLGFPVTSCCY 42
>At1g23600.1 68414.m02972 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220; expression
supported by MPSS
Length = 270
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 118 LVERIKKNAS*KRNKREMMYLRKSLTRWK---LFVKKMRRCSLMLTPRNKRRHKK 273
+V KK+ K K +MM+++ WK L+V R C M P+++ +KK
Sbjct: 156 IVNENKKDLEVKYKKEKMMFMKVFEGSWKIEPLYVDADRLCKNM-KPKSREEYKK 209
>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
Sex-lethal interactor [Drosophila melanogaster]
GI:6049274; contains Pfam profile PF04801: Sin-like
protein conserved region
Length = 689
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +3
Query: 162 EGDDVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYE 320
E D K P +ET +++ L + +E+EE + D+ + E+ +++ S +
Sbjct: 79 EIDSKVDKEPEIMETELMEEDQQLPLQEEKEEEEEEDDVVVREIDVFFKPSID 131
>At4g03820.2 68417.m00529 expressed protein
Length = 453
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +3
Query: 177 PKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPH 356
P H+ + L + + + D EE E D+E+ + +S + + L+TY +N
Sbjct: 341 PTTTQHS-QILSRRRNVVQSSDDDEEGEGDDNDLEIHPIFARAISSQKRQALVTYLENNR 399
Query: 357 SKTRIFG 377
+ ++G
Sbjct: 400 AGITVYG 406
>At4g03820.1 68417.m00528 expressed protein
Length = 437
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +3
Query: 177 PKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPH 356
P H+ + L + + + D EE E D+E+ + +S + + L+TY +N
Sbjct: 341 PTTTQHS-QILSRRRNVVQSSDDDEEGEGDDNDLEIHPIFARAISSQKRQALVTYLENNR 399
Query: 357 SKTRIFG 377
+ ++G
Sbjct: 400 AGITVYG 406
>At3g09290.1 68416.m01103 zinc finger (C2H2 type) family protein ;
contains Pfam profile: PF00096 Zinc finger, C2H2 type
Length = 172
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 201 ETLREKDETMLVNADTEEQEEAQKD-MELDELSTYYENSYEPK 326
+ + E D + +V+ D EQ++ Q + + D+ Y +N PK
Sbjct: 75 DVVAESDASEVVSLDLNEQQQQQGEALTCDDHDQYVDNDISPK 117
>At1g03550.1 68414.m00336 secretory carrier membrane protein (SCAMP)
family protein contains Pfam domain, PF04144: SCAMP
family
Length = 283
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 138 FFYPFHEPFCTFIFYATKVVF 76
FFY FH FC F A V+F
Sbjct: 191 FFYVFHIAFCGFAAVAPPVIF 211
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 195 TLETLREKDETMLVNAD--TEEQEEAQKDMELDE 290
T T + +ET NA+ TEE EAQ+D E DE
Sbjct: 1834 TTTTDGDNEETEAENAEEKTEEYVEAQQDNEADE 1867
>At1g23520.1 68414.m02956 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220; expression
supported by MPSS
Length = 263
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 133 KKNAS*KRNKREMMYLRKSLTRWK---LFVKKMRRCSLMLTPRNKRRHK 270
+KN S KR+MM+++ WK ++V R C M + HK
Sbjct: 157 RKNLSAVYMKRKMMFMKSFEGSWKVEPIYVDSKRLCKQMKPKSREEYHK 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,462,774
Number of Sequences: 28952
Number of extensions: 179335
Number of successful extensions: 710
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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