Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30297
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0349 + 18010414-18014283                                         29   1.7  
05_01_0062 + 440239-440325,441107-441183,441416-441643,441953-44...    29   2.9  
08_02_0190 - 14037655-14038044,14038053-14038436                       28   3.9  
10_08_0904 + 21464762-21467479                                         27   6.8  
03_01_0206 - 1625020-1625619,1625722-1625931,1626054-1626094,162...    27   6.8  
12_01_0981 + 9931542-9931606,9931779-9933105                           27   8.9  
10_01_0196 + 2142132-2142416,2142882-2143574                           27   8.9  
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480...    27   8.9  

>02_03_0349 + 18010414-18014283
          Length = 1289

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -3

Query: 226  SLVSFGICACEKTVENANFLTSMSSKKFGISVLNVHKLSI 107
            SL+S  I +C+K VE+++ L+   +   G+S LN+ +L I
Sbjct: 1127 SLMSLTIASCDKLVEDSSILSPEDADSSGLS-LNLSELDI 1165


>05_01_0062 +
           440239-440325,441107-441183,441416-441643,441953-442176,
           442250-442398,443102-443279,443348-443428,443523-443669,
           443759-444483
          Length = 631

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 258 NDDFDASLVLDYYKYIVVVSEYLKIHDYCKGFEV 359
           +DD+    ++ YY ++ VV    K  D  +G EV
Sbjct: 34  HDDYQLDRIISYYHHVFVVLSSYKAFDQLEGLEV 67


>08_02_0190 - 14037655-14038044,14038053-14038436
          Length = 257

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 437 CNRLT*NNRI-EFCDKIHDIHVAVVKYYFKTFAVIMNFKVFAH 312
           C  +  N RI   C  +  IHV  +KY+       + F+++AH
Sbjct: 104 CTLIRENGRITRQCQSLPSIHVIYLKYHRNVTCAFVAFEMYAH 146


>10_08_0904 + 21464762-21467479
          Length = 905

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 258 NDDFDASLVLDYYKYIVVVSEYLKIHDYCKGFEVI 362
           +D F AS V+D Y    ++ E  K+HD   G +V+
Sbjct: 527 SDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVV 561


>03_01_0206 -
           1625020-1625619,1625722-1625931,1626054-1626094,
           1626185-1626234,1626345-1626433,1626534-1626608,
           1626721-1626806,1626896-1626956,1627090-1627206,
           1627308-1627549,1627983-1628040,1628162-1628284
          Length = 583

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
 Frame = +3

Query: 192 FSHAHMPKLTKDNYRIYILKVYNDDFDASLVLDY-YKYIVVVSEYLKIHDYCKGFEVILD 368
           F +AH+ + +K ++  YI +   DDF   + +     ++ ++  +L I  +  G  + + 
Sbjct: 252 FINAHLSQNSKFDFHKYIKRSLEDDFKVVVGISLPLWFVAILVLFLDIQGF--GTLIWIS 309

Query: 369 YSDVNVMNFV-TKFNPVILRQAVTLITDGYGMRIKGVYIISPS 494
           +  + ++  V TK   VI+  A  +        IKG  ++ PS
Sbjct: 310 FVPLVILMLVGTKLEMVIMEMAQEI--QDRATVIKGAPVVEPS 350


>12_01_0981 + 9931542-9931606,9931779-9933105
          Length = 463

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +3

Query: 96  AKTRIDNLCTFKTLMPNFFEDIDVKKFAFSTVFSHAHMPKLTKDNYRIYILKVYNDDFDA 275
           AK++I+   TF+ L      D  + KF  +        P LTKD +  Y +    D+   
Sbjct: 262 AKSKIEITETFRNLKQYGSVDSYIDKFEDTMTLVKRSNPTLTKDYFLDYFISGLKDNIKR 321

Query: 276 SL-VLDYYKYIVVVSEYLKIHD 338
            L  L  Y  +V   E+ + +D
Sbjct: 322 PLKSLSIYS-LVTAYEHARNYD 342


>10_01_0196 + 2142132-2142416,2142882-2143574
          Length = 325

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +3

Query: 159 IDVKKFAFSTVFSHAHMPKLTKDNYRIYILKVYNDDFDASLVLDYYKYIVVVSEYLKIHD 338
           ID+ K A S+   H   P    +  +  + KV   DF A  V+   +   +V+   +I  
Sbjct: 234 IDITKLASSSSPLHLMPPNCEDNQSKRSLTKVMFSDFIADSVVIPKENFELVTWESRIPP 293

Query: 339 YCKGFEVILDYSDVNVMNF 395
           Y K   ++ +Y D   MNF
Sbjct: 294 YRKFVNIVSNYDD--EMNF 310


>06_03_0783 -
           24546403-24546765,24547202-24547262,24547899-24548004,
           24548118-24551600,24553134-24553179
          Length = 1352

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 377 RECHEFCHKIQSCYFTSSGYINNGWLRHE 463
           ++C  FC      Y+   G + N W+ HE
Sbjct: 479 QQCFSFCGLFPKGYYFEPGILVNMWIAHE 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,676,810
Number of Sequences: 37544
Number of extensions: 267725
Number of successful extensions: 585
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)