Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30297
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of a...    34   0.069
AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.      34   0.069
AL110477-2|CAB54338.1|  319|Caenorhabditis elegans Hypothetical ...    31   0.65 
U80023-4|AAG24038.1|  318|Caenorhabditis elegans Serpentine rece...    30   0.85 
Z82262-7|CAB54195.2|  218|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF003134-4|AAB54145.2|  395|Caenorhabditis elegans Hypothetical ...    29   2.6  
U40415-1|AAK39255.4|  445|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL132863-2|CAB60569.1|  317|Caenorhabditis elegans Hypothetical ...    28   4.6  
AC006723-1|AAF59429.3|  534|Caenorhabditis elegans Hypothetical ...    28   4.6  

>U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 5 protein.
          Length = 700

 Score = 33.9 bits (74), Expect = 0.069
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
 Frame = +3

Query: 114 NLCTFKTLMPNFFEDIDVKKFAFSTVFSHAHMPKLTKDNYRIYILKVYNDDFDASLVLDY 293
           NL TF+  + N FE+   KKFA      +    + T DNY I+    + D    S V  +
Sbjct: 53  NLETFELSLRNHFEEKTNKKFA-----DYREFHRFTCDNYGIF----WEDLLKLSDVKLH 103

Query: 294 YKYIVVVSEYLKIHDYCKGFE-VILDYSDVNVMNFVTKFNPVILRQAV--TLITDGYGMR 464
             Y  V+   LKI++  + F    L+Y++ NV+   T  +  +L  ++  T+    Y   
Sbjct: 104 QNYNQVIDHNLKINERPRWFNGATLNYTE-NVIERGTATDIAVLNASIEETVTEYTYDNL 162

Query: 465 IKGVYIISPS 494
            K VY I+ S
Sbjct: 163 RKDVYRIATS 172


>AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.
          Length = 700

 Score = 33.9 bits (74), Expect = 0.069
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
 Frame = +3

Query: 114 NLCTFKTLMPNFFEDIDVKKFAFSTVFSHAHMPKLTKDNYRIYILKVYNDDFDASLVLDY 293
           NL TF+  + N FE+   KKFA      +    + T DNY I+    + D    S V  +
Sbjct: 53  NLETFELSLRNHFEEKTNKKFA-----DYREFHRFTCDNYGIF----WEDLLKLSDVKLH 103

Query: 294 YKYIVVVSEYLKIHDYCKGFE-VILDYSDVNVMNFVTKFNPVILRQAV--TLITDGYGMR 464
             Y  V+   LKI++  + F    L+Y++ NV+   T  +  +L  ++  T+    Y   
Sbjct: 104 QNYNQVIDHNLKINERPRWFNGATLNYTE-NVIERGTATDIAVLNASIEETVTEYTYDNL 162

Query: 465 IKGVYIISPS 494
            K VY I+ S
Sbjct: 163 RKDVYRIATS 172


>AL110477-2|CAB54338.1|  319|Caenorhabditis elegans Hypothetical
           protein Y113G7B.3 protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 249 KVYNDDFDASLVLDYYKYIVVVSEYLKIHDYCKGFEVILDYSDV--NVMNFVTKFNPVIL 422
           K+  D+F  S   DY   I ++ E   + D  +  +VILD  +   +  + ++ F P IL
Sbjct: 124 KLRLDEFKLSAGWDYMMTINLLKEIKDVEDMFQAKKVILDVFEFCRDAFSILSHFEPGIL 183

Query: 423 RQAVTLITDGYG 458
            +     +D YG
Sbjct: 184 EEIGIFCSDVYG 195


>U80023-4|AAG24038.1|  318|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 25 protein.
          Length = 318

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 30/102 (29%), Positives = 46/102 (45%)
 Frame = +3

Query: 24  FLKKDFSREYLERTLITTKGLVERAKTRIDNLCTFKTLMPNFFEDIDVKKFAFSTVFSHA 203
           F++K  S+   + ++I T    +  + R+  + TFK ++P+F        F   TVF  A
Sbjct: 195 FIRKSLSKFARKMSVIKTNE--KNLRNRLVKVATFKLILPSFI-------FLGITVFV-A 244

Query: 204 HMPKLTKDNYRIYILKVYNDDFDASLVLDYYKYIVVVSEYLK 329
              +L    Y  YI+ V    F  S V   Y YI+ V  Y K
Sbjct: 245 MFTRLLDYQYGQYIVSVC---FMFSPVCSPYAYIIFVPHYRK 283


>Z82262-7|CAB54195.2|  218|Caenorhabditis elegans Hypothetical
           protein C43F9.8 protein.
          Length = 218

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
 Frame = +3

Query: 72  TTKGLVERAKTRIDNLCTFKTLMPNFF-----EDIDVKKFAFSTVFSHAHMPKLTKDNYR 236
           T+ G +E    + D LCT K +   F        I+  KFA  T+         T   Y 
Sbjct: 126 TSDGTLEGIDRKKDGLCTAKQMKIKFEVGQDRRGIENPKFAARTLKKDRDAEHSTPVMYV 185

Query: 237 IYILKVYNDDFDASLVLDYYKYIVVV--SEYL 326
           ++     +DD D S    Y+  IVV+  S YL
Sbjct: 186 VHDESDIDDDDDGSNACSYFVSIVVLLASRYL 217


>AF003134-4|AAB54145.2|  395|Caenorhabditis elegans Hypothetical
           protein ZC581.7 protein.
          Length = 395

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +3

Query: 153 EDIDVKKFAFSTVFSHAHMPKLTKDNYRIYILKVYNDDFDASLVLDYYKYIVVVSEY 323
           +D+D KK   S  +   ++ +LTK+N +I + K+  +  D   + +  K   V+  Y
Sbjct: 118 KDVDFKKKLGSGAYGTVYLGRLTKNNTKIAVKKLDTEGNDEESLAEMMKEARVMQLY 174


>U40415-1|AAK39255.4|  445|Caenorhabditis elegans Hypothetical
           protein K02G10.3 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = -3

Query: 211 GICACEKTVENANFLTSMSSKKFGISVLNVHKLSIRVLARSTRPFVVISVRSRYSLLKSF 32
           G+    KT  +   +T++ SK+  +  +N  K  I V   S   F+V ++   + +L   
Sbjct: 42  GLIFSLKTYASFYLITNVVSKRGRLDKINWKKFGIDVCQSSL--FLVTNM-CFFLILLCK 98

Query: 31  FRKWFCFFT 5
           FRKW  FFT
Sbjct: 99  FRKWLGFFT 107


>AL132863-2|CAB60569.1|  317|Caenorhabditis elegans Hypothetical
           protein Y37H2A.4 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +3

Query: 234 RIYILKVYNDDFDASLVLDYYKYIVVVSEYLKIHDYCKGFEVILDYSDVNVMNFVTKFNP 413
           R     +Y D  D    ++++K I       K+       ++IL  SD N+   ++ F P
Sbjct: 131 RFIFSTIYEDTEDVETAMNWFKSISDSGNLWKVG------KIILRTSDCNIPRILSSFQP 184

Query: 414 VILR 425
            +LR
Sbjct: 185 AVLR 188


>AC006723-1|AAF59429.3|  534|Caenorhabditis elegans Hypothetical
           protein Y19D10B.2 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 102 TRIDNLCTFKTLMPNFFEDIDV 167
           T  +NLCTF  + P  F D++V
Sbjct: 457 TTSENLCTFPEICPKIFGDVEV 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,269,126
Number of Sequences: 27780
Number of extensions: 258905
Number of successful extensions: 644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)