Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30297
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g11310.1 68414.m01299 seven transmembrane MLO family protein ... 32 0.26
At1g27260.1 68414.m03321 paired amphipathic helix repeat-contain... 29 2.5
At5g28930.1 68418.m03578 hypothetical protein various predicted ... 27 7.5
At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin... 27 7.5
At2g22560.1 68415.m02674 kinase interacting protein-related simi... 27 7.5
At4g19440.1 68417.m02860 pentatricopeptide (PPR) repeat-containi... 27 9.9
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 27 9.9
At2g48020.2 68415.m06011 sugar transporter, putative similar to ... 27 9.9
At2g48020.1 68415.m06010 sugar transporter, putative similar to ... 27 9.9
At2g26810.1 68415.m03217 expressed protein and genefinder 27 9.9
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 27 9.9
At1g52650.1 68414.m05945 F-box family protein contains F-box dom... 27 9.9
>At1g11310.1 68414.m01299 seven transmembrane MLO family protein /
MLO-like protein 2 (MLO2) idenctical to membrane protein
Mlo2 [Arabidopsis thaliana] gi|14091574|gb|AAK53795;
similar to Mlo [Hordeum vulgare subsp. vulgare]
gi|1877221|emb|CAB06083 SWISS-PROT:P93766
Length = 573
Score = 31.9 bits (69), Expect = 0.26
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +3
Query: 129 KTLMPNFFEDIDVKKFAFSTVFSHAHMPKLTKDNYRIYILKVYNDDFDASLVLDY--YKY 302
KT+ + D + +FA T F H+ +K ++I+ + F + +DY ++
Sbjct: 200 KTIEYQYSNDPERFRFARDTSFGRRHLNFWSKTRVTLWIVCFFRQFFGSVTKVDYLALRH 259
Query: 303 IVVVSEYLKIHDYCKGFEVILDYSDVNVMNFVTKFNPVILRQAVT-LITDGYGMR 464
+++ + ++ F + S V + +PVI AV L+T+ YG+R
Sbjct: 260 GFIMAHFAPGNESRFDFRKYIQRSLEKDFKTVVEISPVIWFVAVLFLLTNSYGLR 314
>At1g27260.1 68414.m03321 paired amphipathic helix repeat-containing
protein low similarity to transcriptional repressor
SIN3B [Mus musculus] GI:2921547; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 222
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 81 GLVERAKTRIDNLCTFKTLMPNFFEDIDVKKFAFSTVFSHAHMPKLTKDNYRIYILKV 254
GLVE K +D L F L+P F+ I + F V + P+ T ++ Y+ V
Sbjct: 45 GLVELIKDHLDLLLGFNALLPARFQ-IPITPAGFQNVVGRSVPPETTIEDATSYLNSV 101
>At5g28930.1 68418.m03578 hypothetical protein various predicted
proteins, Arabidopsis thaliana
Length = 509
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 324 LKIHDYCKGFEVILDYSDVNVMNFVTKFNPVI 419
L IHD +GF+V D +++ + NPVI
Sbjct: 340 LTIHDTTRGFDVAPDRVEISGIQVHVSLNPVI 371
>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
lysine--tRNA ligase, putative similar to SP|Q43776
Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
{Lycopersicon esculentum}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 626
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +3
Query: 234 RIYILKVYNDDFDASLVLDYYKYIVVVSEYLKIHDYCKGFEVI 362
+++ ++ DDF ++ D K + +E+LK+H K +++
Sbjct: 155 KLFFYDLHGDDFKVQVMADASKSGLDEAEFLKLHSNAKRGDIV 197
>At2g22560.1 68415.m02674 kinase interacting protein-related similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]; weak similarity to Myosin II heavy chain,
non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
Length = 891
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 87 VERAKTRIDNLCTFKTLMPNFF--EDIDVKKFAFSTVFSHAHMPKLTK 224
++ A T I ++ F +PNF +DID+ KFA + S A++P + K
Sbjct: 34 LQNANTTIASV--FPDQVPNFAMDDDIDMSKFAKRSNISGANVPNVPK 79
>At4g19440.1 68417.m02860 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 825
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -3
Query: 226 SLVSFGICACEKTVENANFLTSMSSKKFGISVLNVHKLSIRVLARSTRPFVVISVR 59
S++ G C E+T E F M SK + + V+ IR RS R + + +R
Sbjct: 614 SVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTV-VYNHLIRAYCRSGRLSMALELR 668
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 75 TKGLVERAKTRIDNLCTFKTLMP 143
TK +VE DN+CT + MP
Sbjct: 514 TKAMVEELLREFDNVCTLRVRMP 536
>At2g48020.2 68415.m06011 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 463
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 303 IVVVSEYLKIHDYCKGFEVILDYSDVNVMNFVTKFNPVILRQAVTLITDGYGMRIKGV 476
I VS YLK+HD E + + V +M ++ F+ + ++++ + + IKGV
Sbjct: 341 IAAVSFYLKVHD--MAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGV 396
>At2g48020.1 68415.m06010 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 463
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 303 IVVVSEYLKIHDYCKGFEVILDYSDVNVMNFVTKFNPVILRQAVTLITDGYGMRIKGV 476
I VS YLK+HD E + + V +M ++ F+ + ++++ + + IKGV
Sbjct: 341 IAAVSFYLKVHD--MAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGV 396
>At2g26810.1 68415.m03217 expressed protein and genefinder
Length = 197
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 243 ILKVYNDDFDASLVLDYYKYIVVVSEYLKI 332
ILK +ND FD L+L YI++V + L+I
Sbjct: 105 ILKKHNDGFD--LILGAEIYILIVEQLLRI 132
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 75 TKGLVERAKTRIDNLCTFKTLMP 143
TK +VE DN+CT + MP
Sbjct: 517 TKAMVEELLREFDNVCTLRVRMP 539
>At1g52650.1 68414.m05945 F-box family protein contains F-box domain
Pfam:PF00646
Length = 465
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/57 (19%), Positives = 25/57 (43%)
Frame = -2
Query: 392 IHDIHVAVVKYYFKTFAVIMNFKVFAHNHNVLVIVQDEGSVKIIVVNF*YIYSVVIL 222
+H + + V K++F+ + +FA + + S+K + + F Y + L
Sbjct: 166 LHSVKLCVDKFFFRALPALEELVLFAVSWRDRDVTVSNASIKTLTIKFNYYLGTLSL 222
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,418,993
Number of Sequences: 28952
Number of extensions: 232926
Number of successful extensions: 544
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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