Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30295
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 66 1e-11
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 61 4e-10
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 55 2e-08
At2g36670.2 68415.m04498 aspartyl protease family protein contai... 28 3.2
At2g36670.1 68415.m04497 aspartyl protease family protein contai... 28 3.2
At5g19130.2 68418.m02277 GPI transamidase component family prote... 28 4.3
At5g19130.1 68418.m02276 GPI transamidase component family prote... 28 4.3
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 28 4.3
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 27 5.7
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 27 5.7
At3g21200.1 68416.m02679 expressed protein 27 5.7
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con... 27 9.9
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 27 9.9
At1g67623.1 68414.m07708 F-box family protein hypothetical prote... 27 9.9
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 66.1 bits (154), Expect = 1e-11
Identities = 41/121 (33%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Frame = +1
Query: 136 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEV 315
R+++T + + R+KSVKNIQKIT++MKMV+A+K + + +R + F
Sbjct: 41 RSIST-QVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQ---PFTALLGD 96
Query: 316 TPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIR--NRLSEPGAENIKVICVGDKSRGILQ 489
P D K + V ++SD+GLCG +++ V KV R +L+ + ++ + VG+K++ I+
Sbjct: 97 NPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMF 156
Query: 490 R 492
R
Sbjct: 157 R 157
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 61.3 bits (142), Expect = 4e-10
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Frame = +1
Query: 145 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPP 324
A+L+ + R+ SVKN QKIT++MK+V+AAK RA+ + RP+ E V+
Sbjct: 51 ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQ 110
Query: 325 EDD-----------PKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVG 465
DD K V +T DRGLCG + + K R+ E ++ VI VG
Sbjct: 111 TDDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVG 170
Query: 466 DKSRG-ILQRLY 498
K L+R Y
Sbjct: 171 KKGNSYFLRRPY 182
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 55.2 bits (127), Expect = 2e-08
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Frame = +1
Query: 145 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTP 321
A ++ + R+ SVKN QKIT++M++V+AA+ RA+ + RP+ E V+ Y +
Sbjct: 61 AGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVEILYSINQSAQ 120
Query: 322 PEDDPKQL----------FVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVG 465
ED L V +T D+GLCG + V+K R+ E I VI VG
Sbjct: 121 LEDIDFPLSIVRPVKRVALVVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVG 180
Query: 466 DKSRGILQR 492
K R
Sbjct: 181 KKGNAYFSR 189
>At2g36670.2 68415.m04498 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 507
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 443 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 327
F APGSL +T P+C++ + + + NN G S
Sbjct: 147 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 185
>At2g36670.1 68415.m04497 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 512
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 443 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 327
F APGSL +T P+C++ + + + NN G S
Sbjct: 152 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 190
>At5g19130.2 68418.m02277 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 696
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 515 LMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 384
++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 511 IVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554
>At5g19130.1 68418.m02276 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 699
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 515 LMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 384
++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 514 IVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 471 FISHTDHLDVLSTRFAETVADHFRYTSVYSSAQTSVRGHSNKQLLG 334
F H HL + R AE HF T ++A+ ++ G K++ G
Sbjct: 536 FFRHAAHLSGVPLRMAERGRRHFPLTKSQNTAEDTLSGMLKKKIDG 581
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 118 PPPRLGCPHPVRSVPTFCKFYGCLSVKFTS 29
PPP G P PT C +G L+++ +S
Sbjct: 1249 PPPESGIPSITNPWPTPCSQFGVLAIRSSS 1278
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 177 FKTDGNGLQSSHIPVWLMVNHRHDLGAH 94
F++DGN L +SH W+ H+ LG H
Sbjct: 1190 FESDGNELSASH---WVSFFHQASLGTH 1214
>At3g21200.1 68416.m02679 expressed protein
Length = 317
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 440 SAPGSLR-RLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSALS 300
S P SLR + TLDTP + HKP + + + + SS G S L+
Sbjct: 35 SRPISLRCSVSTTLDTPATASTHKPFPAEV-SRSIMELSSVGTLSTLT 81
>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to anther-specific protein ATA27 (GI:2746341)
[Arabidopsis thaliana]
Length = 534
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 480 TARFISHTDHLDVLSTRFAETVADHFRY 397
TARF++H H+D+ RF T H +Y
Sbjct: 345 TARFVAHDLHVDLSRPRF--TTDQHLQY 370
>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
receptor kinase 1 (BAK1) / somatic embryogenesis
receptor-like kinase 3 (SERK3) identical to SP|Q94F62
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
1 precursor (EC 2.7.1.37) (BRI1-associated receptor
kinase 1) (Somatic embryogenesis receptor-like kinase 3)
{Arabidopsis thaliana}; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain;
identical to cDNA somatic embryogenesis receptor-like
kinase 3 (SERK3) GI:14573458
Length = 615
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 301 ERAEVTPPEDDPKQLFVAMTSDRGL 375
ER E PP D PK+ +A+ S RGL
Sbjct: 377 ERPESQPPLDWPKRQRIALGSARGL 401
>At1g67623.1 68414.m07708 F-box family protein hypothetical protein
; similar to SKP1 interacting partner 2 (SKIP2)
TIGR_Ath1:At5g67250
Length = 296
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 172 LKSVKNIQKITQSMKMVSAAKYTRAERDLKAAR--PYGEGAVQFYER-AEVTPPE 327
L +V+N++ +++S + + KY LK P+ E + +F ER E PE
Sbjct: 44 LSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHENSAKFIERCTESRNPE 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,727,732
Number of Sequences: 28952
Number of extensions: 283266
Number of successful extensions: 727
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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