Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30294
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.61 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   10.0 

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +1

Query: 139 VLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTADLF 318
           + R+ V+L  L   L   SV  IQ+ GT F     ++RF      Y  P +E  +T  + 
Sbjct: 1   MFREFVLLASLLY-LGNESVHGIQKWGTQFGQAPLLERFFWRTLDYAYP-DEASKTMAMM 58

Query: 319 ERRNIPQVTL 348
           +   IP+  L
Sbjct: 59  KGEYIPENAL 68


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 213 ERNQLPAHGE 242
           E NQLP HG+
Sbjct: 49  ENNQLPTHGK 58


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 442 FTEEQLRAHNAELNLQMGFNK 504
           FT+++    + ELNLQ  FN+
Sbjct: 17  FTKQKKVKEDTELNLQTIFNE 37


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 145 RDGVILCKLANKLAPGSVKKIQ 210
           R+G  LC+ +N +  G  K +Q
Sbjct: 780 REGFYLCQASNGIGSGIGKVVQ 801


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 145 RDGVILCKLANKLAPGSVKKIQ 210
           R+G  LC+ +N +  G  K +Q
Sbjct: 776 REGFYLCQASNGIGSGIGKVVQ 797


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 397 GPQLGPKMADKNERTFTEE 453
           GP+ GPK+ +K +    +E
Sbjct: 203 GPEKGPKVPEKKKEDEIDE 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,172
Number of Sequences: 438
Number of extensions: 3780
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)