Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30291
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 38 6e-04
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 31 0.054
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 31 0.095
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 31 0.095
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 31 0.095
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 29 0.29
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 29 0.29
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 29 0.29
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 28 0.51
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 0.51
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 28 0.51
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 0.51
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 27 1.2
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 27 1.2
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 1.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 1.5
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.0
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 2.0
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 26 2.7
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 26 2.7
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 3.6
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 3.6
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 25 3.6
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 4.7
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 4.7
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 25 6.2
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.2
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 24 8.2
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 24 8.2
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 24 8.2
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 24 8.2
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 37.9 bits (84), Expect = 6e-04
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +3
Query: 102 SSKAKIEQELAIVAADYDEITKELRI--ADERYQRVQTELKHTVEHLHEEQERIVK-IEA 272
SSK +IE+E+ V +DE+ ++ + +D ++V+ L T L+EE + K I+
Sbjct: 1012 SSKDRIEREVKNVVEKFDEVNDQIELMRSDVLLRKVRPGLDQT-SQLNEESAYLEKRIQT 1070
Query: 273 VKKSLEIEVKNISVRLEEVEANAIV 347
+++SLE EV I + E E NAIV
Sbjct: 1071 LERSLE-EVTPIWKKQWERELNAIV 1094
Score = 25.8 bits (54), Expect = 2.7
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -2
Query: 391 YRAPPSSLLMIRLPPTIALASTSSRRTEMFL----TSISRDFLTASILTILS 248
Y P+S + I PP+ AL S +S T + + +S F TA + TI+S
Sbjct: 691 YPKKPASPVEITEPPSSALVSATSPTTNVPIVPEAVHLSTAFSTAPVSTIVS 742
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 31.5 bits (68), Expect = 0.054
Identities = 20/101 (19%), Positives = 49/101 (48%)
Frame = +3
Query: 24 KRSVEQQYEESQTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITKELRIADERYQRV 203
++ Q YE+ ++ E +N + K+++ + ++ + E L D Q++
Sbjct: 424 EKKTRQSYEQQTVKIEEQLKFLLN---KEKKLKKSIEALSFEKSEAENSLSSHDIDSQKL 480
Query: 204 QTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEE 326
+E+ L +E+ + ++ ++KSL+ + + IS +EE
Sbjct: 481 NSEIADLSLRLQQEE---LSLDDIRKSLQGKTEGISNAIEE 518
Score = 27.5 bits (58), Expect = 0.88
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 144 ADYDEITKELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEV 299
A + K++++ D RY++ +EL+ + E ERI E L+++V
Sbjct: 809 ASVETCDKQVQLEDTRYRQHLSELESLNQRFTEISERIPSAELEISKLQLDV 860
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 30.7 bits (66), Expect = 0.095
Identities = 21/102 (20%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Frame = +3
Query: 36 EQQYE----ESQTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITKELRIADERYQRV 203
EQ+YE +S+ ++L + + K + E I + +++++++ + +E +
Sbjct: 40 EQEYESLSRKSEAAESQLEELEEETKQLRLKADNE-DIQKTEAEQLSRKVELLEEELETN 98
Query: 204 QTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEV 329
L+ T E + + + E +SLE E ++ +LEE+
Sbjct: 99 DKLLRETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEEM 140
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 30.7 bits (66), Expect = 0.095
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Frame = +3
Query: 3 YEQALRVKRSVEQQYEESQTRVNELT-VINVNLSSSKAKIEQELAIVAADYDEITKELRI 179
+E R + + +E Q ++ LT N +++ E+ + E + +
Sbjct: 300 FEILKRERNECNAKIDELQDKLELLTDAYNREKRRARSLEERMSKEMLTKLGESNVDDGM 359
Query: 180 ADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRL--EEVEANAIVGG 353
A RY V+ E + EHL QE+ I++V K++ ++ ++ +RL + E N ++
Sbjct: 360 AASRYDTVKREKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGNKISENNELLNE 419
Query: 354 KRIISK 371
R++ +
Sbjct: 420 NRVLKE 425
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 30.7 bits (66), Expect = 0.095
Identities = 19/79 (24%), Positives = 33/79 (41%)
Frame = +3
Query: 6 EQALRVKRSVEQQYEESQTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITKELRIAD 185
E+ +R+ + + T+V EL N +L E +LA + + Y E EL +
Sbjct: 1007 EKLMRLDDELLLKQRSYDTKVQELREENASLKDQCRTYESQLASLVSKYSETESELNKKE 1066
Query: 186 ERYQRVQTELKHTVEHLHE 242
Q E+ + LH+
Sbjct: 1067 AELVIFQKEITEYRDQLHK 1085
Score = 27.5 bits (58), Expect = 0.88
Identities = 14/65 (21%), Positives = 31/65 (47%)
Frame = +3
Query: 114 KIEQELAIVAADYDEITKELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEI 293
+ + +V + ++ IADE+Y+ + E + E L +Q I + + +LE
Sbjct: 892 RANSRVEVVHERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEK 951
Query: 294 EVKNI 308
++ +I
Sbjct: 952 KLSSI 956
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 29.1 bits (62), Expect = 0.29
Identities = 26/100 (26%), Positives = 47/100 (47%)
Frame = +3
Query: 78 TVINVNLSSSKAKIEQELAIVAADYDEITKELRIADERYQRVQTELKHTVEHLHEEQERI 257
T+ NL K ++E+E +V + T+ +A + +RV V LH ++ RI
Sbjct: 394 TIARNNLQEIK-QVEREDTLVGVRRSKRTRIAPLAFWKNERV-------VYELHRDENRI 445
Query: 258 VKIEAVKKSLEIEVKNISVRLEEVEANAIVGGKRIISKLE 377
+ VK+ + ++ + S+R + +A G I S LE
Sbjct: 446 PALPEVKQIIRVDDPSPSIRQGRKKRHAKRSGVEIKSNLE 485
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 29.1 bits (62), Expect = 0.29
Identities = 23/104 (22%), Positives = 45/104 (43%)
Frame = +3
Query: 6 EQALRVKRSVEQQYEESQTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITKELRIAD 185
E+A R+ + +Q + S + EL S K K EQ+ + D + E+++
Sbjct: 441 EKAFRLVK--QQTVKSSHSHYQELIT---KFSVEKEKAEQKYFLTMKSTDSLHAEVKLLR 495
Query: 186 ERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVR 317
++YQ+ + + RI++ E L V+N S++
Sbjct: 496 QKYQKTNEIISKMLNSQDTAVHRIIEFEDQLARLS-SVRNNSIK 538
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 29.1 bits (62), Expect = 0.29
Identities = 18/92 (19%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +3
Query: 33 VEQQYEESQTRVNELTVINVNLS--SSKAKIEQELAIVAADYDEITKELRIADERYQRVQ 206
V +YE+ +T++ +L N N + +++Q + + E R+ + YQ+ +
Sbjct: 692 VTSEYEKLETQLKDLKTQNANFHRLEQEIQLKQHELTLLIEQRETDSSFRLLSD-YQQYK 750
Query: 207 TELKHTVEHLHEEQERIVKIEAVKKSLEIEVK 302
++K + L E I++ + K +E +++
Sbjct: 751 DDVKDLKQRLPELDRLILQSDQAIKKIERDMQ 782
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 0.51
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +3
Query: 24 KRSVEQQYEESQTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITKELRIADERYQRV 203
+R + ++ E+ + +EL I++ ++ + E+E+ + D DEI L DE +
Sbjct: 360 EREIRKEVTET-LKGDELRKISLQVNVKFS--EEEVTLEDVDDDEIEDILLDKDEILTKT 416
Query: 204 QTELKHTVEHLHEEQERIVKI-EAVKKSL 287
Q ++ ++L EE+ + +K+ E +KK +
Sbjct: 417 QVWMELNKDYLAEEEAKNLKLQEDLKKGI 445
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 0.51
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = +3
Query: 36 EQQYEESQTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITKELRIADERYQRVQTEL 215
E+ ES++ + + + S + E E + + E +E+ + E + +E
Sbjct: 81 EESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSES 140
Query: 216 KHTVEHLHEEQERIVKIEAVKKS 284
+ E EE+E +VKIE K+S
Sbjct: 141 SSSSES-EEEEEAVVKIEEKKES 162
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 28.3 bits (60), Expect = 0.51
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +3
Query: 66 VNELTVINVNLSSSKA-KIEQELAI-VAADYDEITKELRIADERYQRVQTELKHTVEHLH 239
+ EL + N+ K +IE E + + K++ ++ + + + + ++ L+
Sbjct: 31 LEELNLKNIERRVKKYDQIESEYKTNIENEKKAFIKDVSQVQQKIKEFEIQKANQIKQLN 90
Query: 240 EEQERIVKIEAVKKSLEIEVKN 305
EE+ + IEA K+ LEIE++N
Sbjct: 91 EEK---LSIEARKQQLEIEIRN 109
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 0.51
Identities = 16/85 (18%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +3
Query: 57 QTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITKELRIADERYQRVQTELKHT-VEH 233
+T++ L N + ++++ + + DE+ +L A+++YQ + +++ V+
Sbjct: 565 ETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKKYQELAISFENSNVKT 624
Query: 234 LHEEQERIVKIEAVKKSLEIEVKNI 308
E + + +EA+K + +KN+
Sbjct: 625 QSVEPDNGLSLEALKNENQTLLKNL 649
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 27.1 bits (57), Expect = 1.2
Identities = 19/71 (26%), Positives = 28/71 (39%)
Frame = +3
Query: 129 LAIVAADYDEITKELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNI 308
L I D + ++DE Y ++T + HL E V+ SLE V +
Sbjct: 317 LGIHTGDSIVVAPSQTLSDEEYHMLRTAAIKIIRHLGVVGECNVQYALSPNSLEYRVIEV 376
Query: 309 SVRLEEVEANA 341
+ RL A A
Sbjct: 377 NARLSRSSALA 387
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 1.2
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = +3
Query: 183 DERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEVEANAIVGGKRI 362
DE+ R+ + + + L E+ ++ +++ S E E+ ++LE E+N V + +
Sbjct: 157 DEKATRLHLIIANLKKALKEKDAEVLNLQSHVSSKESELDRFKIKLETEESNWKVRLQVL 216
Query: 363 ISKL 374
SKL
Sbjct: 217 ESKL 220
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 1.5
Identities = 25/90 (27%), Positives = 41/90 (45%)
Frame = +3
Query: 6 EQALRVKRSVEQQYEESQTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITKELRIAD 185
EQ R + ++YE ++R +EL L KAK E D + AD
Sbjct: 453 EQVEEETRPIREKYELEKSRGSELQDAKRRLDELKAKAE--------DAERRNDFTLAAD 504
Query: 186 ERYQRVQTELKHTVEHLHEEQERIVKIEAV 275
+Y + +L+ +E+L E+Q+R EA+
Sbjct: 505 LKYYGI-PDLQKRIEYL-EQQKRKADAEAI 532
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 1.5
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Frame = +3
Query: 3 YEQALRVKRSVEQQYEESQTRVNEL---TVINVNLSSSKAKIEQELAIVAADYDEITKEL 173
YEQ + R +E Q + T +N+L I S K+ A + E+ K L
Sbjct: 263 YEQQMITIRHLESQSDIINTTINDLKSQMTITDESSEDLEKLHSNFAEKVKEEQELYKSL 322
Query: 174 RIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLE-IEVKNISVRLEEV 329
+++ +++ LK E L + + KI+ +SLE ++VK S + E+
Sbjct: 323 ---EKKRSDLESLLKSRRELLEKLTGDLGKIQGEIESLEKLKVKK-STMINEI 371
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 114 KIEQELAIVAADYDEITKELRIAD--ERYQRVQTELKHTVEHLHEEQERIV 260
K ++E +++Y ++ ++A +R+ Q ELK + L EE+E+++
Sbjct: 345 KPKKEKRARSSNYIDVPASKKVATSLQRWNDAQKELKDNIPDLSEEEEKLL 395
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 2.0
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +3
Query: 51 ESQTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITKELRIADERYQRVQTELKHTVE 230
ES+ + + N + S + ++ + V +YD I E RY V + + T+E
Sbjct: 171 ESEAIIKQNEERNEEMFQSLIEDKRLCSQVRTEYDRIRMEASELKIRYHNVDSLMASTLE 230
Query: 231 HLHEEQERIV 260
+ + Q IV
Sbjct: 231 EIEKLQSSIV 240
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 25.8 bits (54), Expect = 2.7
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 153 DEITKELRIAD--ERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRL 320
D +TK ++I + + T KH +E + + Q I + + +KSLE E +++ ++L
Sbjct: 64 DLVTKFMQIDTLINQLPGISTAPKHQLEKIKKLQNSIEEKQLERKSLESENEDLKLQL 121
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 2.7
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 90 VNLSSSKAKIEQELAIVAADYDEITKELRIADERYQRVQTELKHT 224
VNL+SSK + + V+ DYD++ I++E + Q E+ T
Sbjct: 168 VNLTSSKQSSINQQSSVSTDYDDLRS---ISEESFHLSQGEIPLT 209
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/56 (21%), Positives = 28/56 (50%)
Frame = +3
Query: 210 ELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNISVRLEEVEANAIVGGKRIISKLE 377
+LK + H E+Q+ + K + ++K+ + E++ + + E + +IS E
Sbjct: 401 QLKSRIAHFKEQQDSVTK-QRIEKAKQ-EIEKLEAKYNSKEEKTLTEADMVISSEE 454
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 398 NWVPGPPLELADDTLATNNSVGFDFFQT 315
N P PPL A + L+T N FD T
Sbjct: 218 NAAPPPPLAQAQEQLSTENEDEFDIDDT 245
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 3.6
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Frame = +3
Query: 117 IEQELAIVAADYDEITKELRIADE-------RYQRVQTELKHTVEHLHEEQERIVKIEAV 275
IEQE I+AA DE+ R+ + +QR+ E +E + E QE+I + +
Sbjct: 27 IEQE--ILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKML 84
Query: 276 KKSLEIEVKNISVRLEEVE 332
+ V+ + ++ +EV+
Sbjct: 85 PYLVGNVVEILDMQPDEVD 103
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 243 PHADARQCVSAQSVRAGISH 184
PHAD+++C + QS+ SH
Sbjct: 201 PHADSQECPTPQSLLMRASH 220
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 9 QALRVKRSVEQQYEESQTRVNELT 80
+++R KRS++ YE S + N++T
Sbjct: 87 KSIRRKRSIDNDYELSNVKRNDIT 110
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 24.6 bits (51), Expect = 6.2
Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 6 EQALRVKRSVEQQYEESQTRVNELTVI-NVNLSSSKAKIEQELAIV 140
E+ +K V++QYE+ Q + N+L + +++ S+ +E+ ++ V
Sbjct: 96 EEIELIKPIVKEQYEQYQCQKNDLDDLKKLSMKDSQPSLEKPVSYV 141
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 323 RSRSQRYCWWQAYHQQARGGGPVPNSP 403
R + +CW AY +Q R NSP
Sbjct: 139 RKSNVLFCWSTAYQKQKRKTASYTNSP 165
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 6.2
Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +3
Query: 93 NLSSSKAKIEQELAIVAADYDEITKELRIADERYQRVQTELKHTVEHLHEEQERIVKIEA 272
N S ++ E + +++ L + Y + + + + E+ + ++
Sbjct: 1243 NFSEFAKRVNTETLSLISEW--CASSLSLIKANYDEFSSTVDDFLFRFSKATEQCLMVKY 1300
Query: 273 VKKSLEIEVK---NISVRLEEV 329
+KK LEIE++ + S++ EE+
Sbjct: 1301 IKKDLEIEIEESCDFSIQTEEI 1322
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 186 ERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLE 290
++YQ +QTEL VE L + + ++ + V LE
Sbjct: 6 KKYQNLQTELSTYVESLKKLETQLQENTTVLNELE 40
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 57 QTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITKELR 176
++R+NE+TV L S+ K + LA + +T+E +
Sbjct: 871 RSRLNEITVYKAFLYSNTDKHKNLLAFAKVPQETMTREFQ 910
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 8.2
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 15 LRVKRSVEQQYE-ESQTRVNELTVINVNLSSSKAKIEQELAIVAADYDEITKELRIADER 191
L K + EQQ + +S+ + E+ NVN + S+ I+ A + + IT+ E
Sbjct: 8 LSPKVTHEQQTDIDSECEITEVDDENVNENKSQEMIQDIPARDREEIENITRTFVELQEN 67
Query: 192 YQRVQTELKHTVEHLHEEQE 251
Y+ ++ + T +++ ++
Sbjct: 68 YRLIEKIGEGTFSSVYKAED 87
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +3
Query: 90 VNLSSSKAKIEQELAIVAA-DYDEITKELRIADERYQRVQTELKHTVE 230
+N+ SS E+ I+ DY +E + + +Q H VE
Sbjct: 250 INILSSPPSPRSEVKIIGIIDYSLFNREFNFFGNKIEPIQASYDHAVE 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,319,766
Number of Sequences: 5004
Number of extensions: 19347
Number of successful extensions: 127
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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