Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30290
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   5.1  
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626...    27   6.8  
03_05_0096 + 20754478-20754584,20755548-20755677,20756212-207562...    27   8.9  
03_03_0029 - 13900912-13901457,13901574-13901709,13901961-139021...    27   8.9  

>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = -2

Query: 497 RNSNEFVIFKEDSVPMTEIMKMLD 426
           RN+ + V++ ++S+P T +++M+D
Sbjct: 839 RNAGQVVLYPKESMPATHLLRMMD 862


>03_02_0649 -
           10162202-10162366,10162455-10162533,10162614-10162670,
           10162741-10162847,10163365-10163580,10163690-10163734,
           10164100-10164258,10164714-10164818,10164902-10165084,
           10165490-10165546,10165625-10165720,10166970-10167104,
           10167188-10167262,10167380-10167479,10167682-10167842,
           10167921-10168068,10168706-10169111,10169794-10169860,
           10169953-10170162,10170570-10170711,10170809-10170870,
           10170965-10171037,10171876-10171985,10172087-10172227
          Length = 1032

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 353 TEGGFPFQLFVFVYPFDNKGKDLAPF-ESFVLDNKPLGFPLD 231
           TE   P    +F+  FDN G  LAPF  S + D K +  PL+
Sbjct: 433 TEKRRPCAEALFIILFDNYGVQLAPFVASIIHDVKAVSPPLE 474


>03_05_0096 +
           20754478-20754584,20755548-20755677,20756212-20756268,
           20756741-20756794,20757610-20758287
          Length = 341

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 354 TSRQHESFRHVTELFRHIKRYFSFVEHLHNFSHWH 458
           +S +H+ FR    +   +K + + V+H+ N + W+
Sbjct: 244 SSLEHDGFRDWRHISERLKEHKASVKHITNMTSWN 278


>03_03_0029 -
           13900912-13901457,13901574-13901709,13901961-13902179,
           13902429-13902801,13903215-13903458
          Length = 505

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
 Frame = +3

Query: 126 RRKIEFVREPFTLVVNENILEIHVRNLE*CIN-NGAIQREAKRLIVKNKRFERSQVLAFV 302
           R +I F +    + + ++I +IH   LE C   N A+QR  K  +     + R+  +  +
Sbjct: 242 RARIIFAKVFQLMTMTDDIYDIHA-TLEECYKFNEAVQRWDKSAVSILPEYLRNFYIRIL 300

Query: 303 VEWIDENKELEWESTFSTSRQHESFRHVTELFRHIKRYFSFVEHLHNFSHWHGVFF 470
            ++ +    LE +     S    SF+  +E +   +  +S  +H+ +F+    V F
Sbjct: 301 NDFDEMEDSLEPDEKHRMSYVKSSFKQQSEYYLR-EAQWSSDKHMPSFAEHLDVSF 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,312,949
Number of Sequences: 37544
Number of extensions: 285096
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)