Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30289
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004) 164 4e-41
SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15) 87 1e-17
SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13) 84 8e-17
SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 5e-15
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 77 7e-15
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0) 71 6e-13
SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09) 70 1e-12
SB_6251| Best HMM Match : NMU (HMM E-Value=5.7) 31 0.43
SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16) 31 0.74
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 29 1.7
SB_12440| Best HMM Match : 7tm_1 (HMM E-Value=0.0003) 28 4.0
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_42243| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45) 27 6.9
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067) 27 9.2
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13) 27 9.2
>SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004)
Length = 114
Score = 164 bits (398), Expect = 4e-41
Identities = 71/105 (67%), Positives = 89/105 (84%)
Frame = +3
Query: 201 DRLRAVFSEVVTVDVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVI 380
++L V+ + TVD LDS+D A+LALL RPELGITFTKI CWNLT Y+KCVF+DAD+LV+
Sbjct: 2 EQLLRVWDHLETVDPLDSQDDANLALLSRPELGITFTKIRCWNLTHYQKCVFMDADMLVL 61
Query: 381 QNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSNETFEKLIQFA 515
QNCDELF+R ELSA PD+GWPDCFNSG+FVF+PS T + L+++A
Sbjct: 62 QNCDELFDRCELSAVPDIGWPDCFNSGMFVFEPSRATHKALLKYA 106
>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
Length = 847
Score = 86.6 bits (205), Expect = 1e-17
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Frame = +3
Query: 72 WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLD 251
W++ ND Y + A+VL HS++ V + L++ VS+A L V V +D
Sbjct: 161 WLSALVNDEYVIPAVVLGHSIKTLSCVKKMLVLVSDEVSKASIHALERTGWSVKLVTAMD 220
Query: 252 SRDAAHLALLQRPELGI--TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAA 425
R GI T T+ H WN TQY K ++ D D +++ N DELF E AA
Sbjct: 221 CRWLERKQGHMPASKGILGTHTRFHAWNYTQYSKIIYADPDYMLLSNMDELFHLSEDFAA 280
Query: 426 PD---VGWPD-CFNSGVFVFKPSNETFEKLIQ 509
+ G D CFN+G+ VF+PS + ++ +++
Sbjct: 281 AECARAGMVDPCFNAGLLVFRPSYKDYKAIME 312
>SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)
Length = 310
Score = 83.8 bits (198), Expect = 8e-17
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Frame = +3
Query: 69 AWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVL 248
AW+T ND + L ALVL +SL++ +A ++ V+ R+ LR V EV + L
Sbjct: 91 AWLTALVNDDFALPALVLGYSLQKFSCQKNMIAFVSEDVTSQTREALRKVGWEVQQHERL 150
Query: 249 DSRDAAHLALLQRPELGI--TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSA 422
D + G T T+ H W TQ+ K V+LD D + + N DELF+ + A
Sbjct: 151 DCDWLQRKLGKKETHEGYIGTHTRFHAWGFTQFSKIVYLDPDYMPMTNIDELFDVDSEFA 210
Query: 423 APDVGWP----DCFNSGVFVFKPSNETFEKLI 506
A P CFN+G+ VF+P N + ++++
Sbjct: 211 ASVCSRPGVLDPCFNAGMLVFRPENRSKKEIM 242
>SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 77.8 bits (183), Expect = 5e-15
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Frame = +3
Query: 93 DSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRDAAHL 272
D Y GAL +AHSLR + + V ++TP V+ R LR V+ +V+ V + + L
Sbjct: 4 DGYAAGALAVAHSLRMVQTKHDLVCMVTPDVTNPTRRHLRVVYDDVIEVPYIRQKCRLFL 63
Query: 273 A----LLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 404
+ + + +FTK +C NL QYE+ +F+DAD++V N D+LFE
Sbjct: 64 SPDQSRMYNDWIEFSFTKWNCLNLVQYERVMFIDADMVVKVNSDDLFE 111
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 77.4 bits (182), Expect = 7e-15
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Frame = +3
Query: 60 SNRAWVTLAT-NDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 236
S AWVTL D Y GAL +A SLR + Y V ++TP V+ R L ++ V+
Sbjct: 257 SRCAWVTLVMLGDGYAAGALAVAQSLRMVQTKYDLVCMVTPDVTHPTRRHLCVMYDHVIE 316
Query: 237 VDVLDSRD----AAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 404
V + R + + + + +FTK +C NL QYE+ +F+DAD++V N D+LFE
Sbjct: 317 VPYIQHRCRKLWSEKQSRMYDDWIEFSFTKWNCLNLVQYERVMFIDADMVVKVNSDDLFE 376
>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1492
Score = 70.9 bits (166), Expect = 6e-13
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 27/173 (15%)
Frame = +3
Query: 72 WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDV-- 245
W+++ ND Y + A+VL H++R V ++ VS++ + L + V+ +V
Sbjct: 1069 WLSVLVNDEYVIPAVVLGHTIRVFSCVKTMTVFVSNEVSKSGQKALEKTMTVFVSNEVSK 1128
Query: 246 ---------------LDSRDAAHLALLQRPELGI------TFTKIHCWNLTQYEKCVFLD 362
++S D+ + EL I T T+ H WN T Y K ++ D
Sbjct: 1129 CGQKALEKFGWSVKEVESMDSHWMEKKLGKELSINDGIIGTHTRFHAWNYTHYRKIIYAD 1188
Query: 363 ADILVIQNCDELFE-REELSAA--PDVGWPD-CFNSGVFVFKPSNETFEKLIQ 509
DI+++ N DELF +E +AA G D CFN+G+ VFKPS+ +E +++
Sbjct: 1189 PDIMLMSNMDELFAIPDEFAAAYCGRSGMVDPCFNAGLLVFKPSHHDYEMIMK 1241
>SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09)
Length = 347
Score = 70.1 bits (164), Expect = 1e-12
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Frame = +3
Query: 60 SNRAWVTLAT-NDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 236
S AWVTL D Y GAL +AHSLRR + + V ++TP V+ + L V+ V+
Sbjct: 45 SRYAWVTLVMCGDGYAAGALAVAHSLRRVETRHDLVYMVTPDVTHSTYRHLCVVYDHVIE 104
Query: 237 VDVLD----SRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 404
V + + + + +FTK +C L YE+ +F+DAD++V +N D+LFE
Sbjct: 105 VQYIQHPCRRLKSEKQQRMYNDWIESSFTKWNCLKL-DYERVLFIDADMIVKENSDDLFE 163
>SB_6251| Best HMM Match : NMU (HMM E-Value=5.7)
Length = 186
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +3
Query: 384 NCDELFEREELSAAPDVGWPD----CFNSGVFVFKPSNETFEKLI 506
N DELF+ + AA P CFN+G+ VF+P N + ++++
Sbjct: 5 NIDELFDVDSEFAASVCSRPGVLDPCFNAGMLVFRPENRSKKEIM 49
>SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16)
Length = 491
Score = 30.7 bits (66), Expect = 0.74
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -2
Query: 224 GENCAK--TIPHSFTDGRCDECYGRVHRAGAAERMGQHQSSQAVGVVCGQSYPCSI 63
G C K +I G+C++ Y + + G + +G Q GV G S CS+
Sbjct: 134 GTRCFKDSSIKDVCIQGKCEKSYLNIQQVGCDDVLGSGQRVDRCGVCNGDSSTCSV 189
>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
Length = 2822
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 183 VSEAMRDRLRAVFSEVVTVDVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLD 362
V E R+R+R ++ T+ ++RD LL R ++ + W+ T E C+ D
Sbjct: 1751 VGEQARERIRRLWEPTYTITYREARDPNDQELLDREKVRESSESPIQWSSTYMEHCLGTD 1810
>SB_12440| Best HMM Match : 7tm_1 (HMM E-Value=0.0003)
Length = 252
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 502 SFSKVSFEGLKTKTPELKQSGH-PTSGAADXXXXXXXXSQFWITNISASRNT 350
SFS EG + + PELK H +G AD Q W+TN +R++
Sbjct: 205 SFSSEHIEGYEMRLPELKPFKHYSLNGTAD-----KQIHQAWVTNCIVARDS 251
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 387 CDELFEREELSAAPDVGWPDCFNSGVFVFKP 479
C++ + + E S +P G PDC G + KP
Sbjct: 1365 CNDRWNKYECSCSPRYGGPDCSLYGCALVKP 1395
>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 74 GNSGHKRLLRLGSSGAGPFAPPRRLGVP 157
G SGHK +L L G PP RL P
Sbjct: 916 GGSGHKVVLHLDCDRDGARQPPERLSSP 943
>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2509
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = -3
Query: 484 FEGLKTKTPELKQSGHPTSGAADXXXXXXXXSQFWITNISASRNTH 347
++G+ K + QSGHP G + +WI ++ + + H
Sbjct: 706 YQGIVAKGNGMVQSGHPAPGPIEAYLSAMSSQWWWINQLTLAFDEH 751
>SB_42243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +3
Query: 366 DILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSNETFEKL 503
D+L+++N ++ ++R L + W D +V K +++F +L
Sbjct: 78 DLLILENLEDGYKRLSLKVLETIKWIDSNVDCSYVLKVDDDSFVRL 123
>SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)
Length = 638
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 188 TDGRCDECYGRVHRAGAAERMGQHQSSQAVGVVCGQS 78
T G C +CYGR G + G +AVGV+ QS
Sbjct: 491 TQGICAKCYGRNLATGKMTQKG-----EAVGVIAAQS 522
>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
Length = 1873
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Frame = -3
Query: 238 TVTTSEKTARRRSLIASLTVGVMSATAGYTEPAR----RSEWASTRAPKP 101
T T S+ + +RR I T +S P+ S WA T PKP
Sbjct: 1754 TTTRSKTSTKRRGPITETTTHTVSTQQRGASPSSPTSASSNWAGTGVPKP 1803
>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Frame = -3
Query: 238 TVTTSEKTARRRSLIASLTVGVMSATAGYTEPAR----RSEWASTRAPKP 101
T T S+ + +RR I T +S P+ S WA T PKP
Sbjct: 1540 TTTRSKTSTKRRGPITETTTHTVSTQQRGASPSSPTSASSNWAGTGVPKP 1589
>SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)
Length = 899
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 235 VTTSEKTARRRSLIASLTVGVMSATAG 155
V TS K +RRRS I+ +ATAG
Sbjct: 693 VVTSSKPSRRRSSISQAAAAFAAATAG 719
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,400,922
Number of Sequences: 59808
Number of extensions: 296273
Number of successful extensions: 837
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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