Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30287
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    29   0.55 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.2  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   2.9  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   5.1  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   6.7  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   8.9  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
 Frame = +3

Query: 222 NGAIQREAKRLIVKNKR-------FERSQVLAFVVEWIDENKELEWESTFSTSRQHESFR 380
           + ++ +   + +V NKR       F + + ++  V+++DE+  L      +   Q    R
Sbjct: 218 SASVSKSENKALVNNKRYSDSYFYFSKMRRISIDVDYVDEDLNL----INAYLSQFGKKR 273

Query: 381 HVTELFRHIKRYFSFVEHLHNFSHWHGVFFKYDKFI 488
            + EL   + R FS   + H FS W  +F  +  FI
Sbjct: 274 SLNELCALLSRRFS---NRHTFSEWRALFMHFFPFI 306


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 148 GNRSPSW*MKISLKYMLG-TLNNASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG*TKT 324
           GN  PS+  K S  Y  G   NN+       G PR   SR   +        +SNG +  
Sbjct: 308 GNSHPSY-NKYS-HYQHGFNYNNSGNNRNESGHPRFRNSRRNYNNQGAYPTYMSNGRSAN 365

Query: 325 KSWNGNPPSVPLGS 366
           +S   NP +V  GS
Sbjct: 366 QSPRNNPQNVNNGS 379


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 20/70 (28%), Positives = 27/70 (38%)
 Frame = +1

Query: 211 NASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG*TKTKSWNGNPPSVPLGSMSLLGM*Q 390
           +A TTG S GKP G  + T   KG  +      G +  K       + P    S      
Sbjct: 264 SAPTTGFSFGKPAGQAASTATDKGTTTTSSAGTGFSFGKPATTEDTNKPTAPNSAFTKPA 323

Query: 391 NSSDISKGTF 420
            S+  +K TF
Sbjct: 324 TSTGDNKPTF 333


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 105 NIRLCVIRRKIEFVREPFTLVVNENILEI 191
           N+  C++ RKIE   E  T V N++ +E+
Sbjct: 488 NVMNCLLYRKIENFEEVLTWVYNKSHIEL 516


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 36  FLHFLWILRMQNSSVY*NLI-FWNNIRLCVIRRKIEFVREPFTL 164
           FL   W+   Q   +  +LI  WN I  CV+   IE VR   T+
Sbjct: 91  FLKSSWLPLKQKRVLTSSLIKLWNEIHDCVLFDAIEHVRSIATI 134


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 443 IMKMLDEGKVPFDMSEEFCY 384
           I K++D G++ FD + + CY
Sbjct: 472 IRKLIDIGEIDFDQAFKICY 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,028
Number of Sequences: 5004
Number of extensions: 48565
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)