Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30287
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41990.1 68415.m05194 expressed protein                             31   0.35 
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    31   0.61 
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    29   2.5  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    29   2.5  
At2g36650.1 68415.m04495 expressed protein                             28   4.3  
At5g45360.1 68418.m05569 F-box family protein  similar to SKP1 i...    27   7.5  
At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit, c...    27   9.9  

>At2g41990.1 68415.m05194 expressed protein 
          Length = 297

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 229 APLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHSLMLFQKIKF 86
           +PLL+HYS  L     +  FT   NG  TN + +   H + L+  + F
Sbjct: 194 SPLLLHYSNLLLSSGEMNKFTVGRNGE-TNVVTVVQGHQIPLYGGVSF 240


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 272 SFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIF 174
           SFV  + P GFP   P  D +F  P++   D+F
Sbjct: 213 SFVPPSSPYGFPSPGPFADDIFDFPSLPVTDLF 245


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 34  SFYIFFG-YYGCKIHQFIKI*FFGTTLDCV 120
           +FY+FF  + G KIHQ+I +  +   + CV
Sbjct: 27  AFYVFFAPFVGKKIHQYIAMGIYTPLITCV 56


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 34  SFYIFFG-YYGCKIHQFIKI*FFGTTLDCV 120
           +FY+FF  + G KIHQ+I +  +   + CV
Sbjct: 27  AFYVFFAPFVGKKIHQYIAMGIYTPLITCV 56


>At2g36650.1 68415.m04495 expressed protein
          Length = 373

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +3

Query: 240 EAKRLIVKNKRFERSQVLAFVVEWIDENKELEWESTFSTSR--QHESFRHVTELFRHIKR 413
           E K  IVK    +   + A+V    +E +EL  +S+ STS     E +R + E +  +K+
Sbjct: 206 ETKNNIVKELEGKVKDMEAYVDVLQEEKEELFMKSSNSTSEMVSVEDYRRIVEEYEELKK 265

Query: 414 -YFSFVEHLHNFSHWHGVFFKYD 479
            Y + V+ + N   W     +++
Sbjct: 266 DYANGVKEVINL-RWSNACLRHE 287


>At5g45360.1 68418.m05569 F-box family protein  similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 316

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 186 EIHVRNLE*CINNGAIQREAKRLIVKNKRFERSQVLAFVVEWIDENKELEWESTFSTSRQ 365
           E   R LE  +++   + E K    K +R E+ +  A   +  D+ +    + T +   +
Sbjct: 9   ECFARFLESEVSSVEDKEETKEPEAKRQRIEKGETKALEKDE-DQKENGNKDKTDAKRIE 67

Query: 366 HESFRHV-TELFRHIKRYFS 422
              F +V TELFRHI ++ S
Sbjct: 68  SGVFTNVPTELFRHILKFLS 87


>At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit,
           component I-1 (ASA1) identical to SP|P32068
          Length = 595

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 273 FERSQVLAFVVEWIDENKELEWESTFSTSRQH 368
           F+  +  A+V+ WI  +  L +E  +S   QH
Sbjct: 236 FDHVEKKAYVIHWIRLDGSLPYEKAYSNGMQH 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,249,397
Number of Sequences: 28952
Number of extensions: 243811
Number of successful extensions: 634
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)