Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30286
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   2.8  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    26   3.7  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   6.4  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    25   6.4  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   8.4  

>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 137 SHGTWVLYPLDHXCHGXEVNVVVALKDLVYP 45
           SHG++ +Y L+   H  ++NVV+  K ++ P
Sbjct: 305 SHGSFSIYKLNANAHSFKLNVVIE-KGIIPP 334


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +2

Query: 59  PSKPQRRLLRYHDTSDPMGTKPTYRD*XQELRAVERKVLRRRKPCMLGTSFLQAHFKGSS 238
           P  P + +   HD  + + T   + D   +L    R+ LRR     L  S L      ++
Sbjct: 260 PWPPNQHIKFAHDDKNVVSTDFIHPDWQYKLERARRRALRRAANATLLNSHLLETGPANA 319

Query: 239 RRNHQFTNLXEMPS 280
             NH  T+L   P+
Sbjct: 320 NANHN-TDLSHDPT 332


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 212 LQAHFKGSSRRNHQFTNLXEMPSQLPLXKRP 304
           L   F  S+ R+HQ  +L EMP + P  + P
Sbjct: 189 LSIEFGFSTFRDHQSISLQEMPERAPPGQLP 219


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 142 PRTSSRGEKSAPSKET-LHAGYLIPASSLQRKFPEKPSIYK 261
           P  S  G+     K+T L     + AS  QRK  EKPS+ K
Sbjct: 193 PLLSVDGDSPLTEKDTNLTTPATLKASDQQRKVLEKPSVSK 233


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 254 IDGFSGNFL*SELAGMRYPAC 192
           I GF  NF   +++GM YP C
Sbjct: 569 IRGFLHNFSLMKISGMAYPQC 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,937
Number of Sequences: 5004
Number of extensions: 39152
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)