Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30286
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45...    27   8.5  
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149     27   8.5  
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    27   8.5  
01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038     27   8.5  

>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
          Length = 1430

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 230  GSSRRNHQFTNLXEMPSQLPLXKRPHGRWPLLRSHDLEPHVLY*LILIWXISCSKYIIVG 409
            G  +  HQ  +   MP+   +     G   + R+ +L  HVL  LIL+   +   Y+++ 
Sbjct: 1209 GLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLS 1268

Query: 410  NV 415
            N+
Sbjct: 1269 NI 1270


>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
          Length = 282

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 246 TINLQTCXRCPVNYPW-XNDPT 308
           T+NLQ    C + YPW  +DPT
Sbjct: 153 TVNLQFTNMCGICYPWPCSDPT 174


>04_01_0508 +
           6647812-6647820,6647864-6648226,6649351-6650673,
           6653569-6653766,6654485-6654568,6655175-6655920,
           6656480-6657341
          Length = 1194

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 36  FLYWIDEILQSHNDVYFXTMTXVIQWVQNPRTVTEXKN 149
           FL+++D + +  +D  F   T  ++ +  P TV E  N
Sbjct: 801 FLFYMDNVREDDHDNIFKLFTVHVRCLPTPNTVDEKLN 838


>01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038
          Length = 370

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 427 NCFSYITYYYVFRATNXPNQYQLIXHV 347
           NC    T++  F +TN PN Y L  H+
Sbjct: 227 NCNKLKTHWSEFGSTNPPNSYALSIHL 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,659
Number of Sequences: 37544
Number of extensions: 261495
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)