Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30286
         (502 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding doma...    29   9.1  
AK093078-1|BAC04045.1|  710|Homo sapiens protein ( Homo sapiens ...    29   9.1  
AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens ...    29   9.1  
AB067474-1|BAB67780.1|  967|Homo sapiens KIAA1887 protein protein.     29   9.1  

>BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding domain
           protein 6 protein.
          Length = 1003

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 118 KTHVP*LXPRTSSRGEKS-APSKETLHAGYLIPASSLQRKFPEKPSIYKLV*DAQSTTPG 294
           K   P L P ++ +G +  A +    H+  L P+   QR+    P++++L+      TP 
Sbjct: 329 KAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPS---QRRPRRPPTVFRLLEGRGPQTPR 385

Query: 295 *TTPRAMATIKEP 333
            + PRA A + +P
Sbjct: 386 RSRPRAPAPVPQP 398


>AK093078-1|BAC04045.1|  710|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35759 fis, clone TESTI2004737. ).
          Length = 710

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 118 KTHVP*LXPRTSSRGEKS-APSKETLHAGYLIPASSLQRKFPEKPSIYKLV*DAQSTTPG 294
           K   P L P ++ +G +  A +    H+  L P+   QR+    P++++L+      TP 
Sbjct: 35  KAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPS---QRRPRRPPTVFRLLEGRGPQTPR 91

Query: 295 *TTPRAMATIKEP 333
            + PRA A + +P
Sbjct: 92  RSRPRAPAPVPQP 104


>AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31837 fis, clone NT2RP7000069, weakly similar to
           MUCIN 1 PRECURSOR. ).
          Length = 1003

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 118 KTHVP*LXPRTSSRGEKS-APSKETLHAGYLIPASSLQRKFPEKPSIYKLV*DAQSTTPG 294
           K   P L P ++ +G +  A +    H+  L P+   QR+    P++++L+      TP 
Sbjct: 329 KAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPS---QRRPRRPPTVFRLLEGRGPQTPR 385

Query: 295 *TTPRAMATIKEP 333
            + PRA A + +P
Sbjct: 386 RSRPRAPAPVPQP 398


>AB067474-1|BAB67780.1|  967|Homo sapiens KIAA1887 protein protein.
          Length = 967

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 118 KTHVP*LXPRTSSRGEKS-APSKETLHAGYLIPASSLQRKFPEKPSIYKLV*DAQSTTPG 294
           K   P L P ++ +G +  A +    H+  L P+   QR+    P++++L+      TP 
Sbjct: 293 KAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPS---QRRPRRPPTVFRLLEGRGPQTPR 349

Query: 295 *TTPRAMATIKEP 333
            + PRA A + +P
Sbjct: 350 RSRPRAPAPVPQP 362


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,564,044
Number of Sequences: 237096
Number of extensions: 1499903
Number of successful extensions: 3180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3180
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)