Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30286
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    49   2e-06
U28735-11|AAM69114.1|  358|Caenorhabditis elegans Hypothetical p...    43   1e-04
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    43   1e-04
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    43   1e-04
AC006709-1|AAF60432.2|  256|Caenorhabditis elegans Hypothetical ...    33   0.12 
AF101309-4|AAV58863.1|  669|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ...    30   1.1  
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    28   3.3  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL110479-7|CAB54355.1|  288|Caenorhabditis elegans Hypothetical ...    27   7.6  

>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
 Frame = +3

Query: 60   LQSHNDVYFXTMTXVIQWVQNPRTVTEXKNFEPWREK--C----SVEGNPA---CWVPHS 212
            + +  DVY  T+  +I W++ P  ++E K+     +   C    S   NP+   C +P+ 
Sbjct: 1781 MSAQKDVYIVTIKQLIDWMKRPVPISEMKSVRGKSKAVGCPITLSFNRNPSLSTCDIPNK 1840

Query: 213  CKLTSKEVPGETINLQTCXRCPVNYPWXNDPTG 311
            C  ++  +  +     TC  CP  YPW  +P G
Sbjct: 1841 CLYSTPSLSSQEHQFLTCLPCPTMYPWLENPAG 1873


>U28735-11|AAM69114.1|  358|Caenorhabditis elegans Hypothetical
           protein F48E3.8c protein.
          Length = 358

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +3

Query: 75  DVYFXTMTXVIQWVQNPRTVTEXKNFEPWREKCSV--EGNPACWVPHSCKLTSKEVPGET 248
           DV+  T + +I +++NP  +   K+   W+ K  +  E NP C  P +C  + +      
Sbjct: 284 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFA 342

Query: 249 INLQTCXRCPVNYPW 293
            + + C  CP +YPW
Sbjct: 343 HSFRMCGVCPKSYPW 357


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +3

Query: 75   DVYFXTMTXVIQWVQNPRTVTEXKNFEPWREKCSV--EGNPACWVPHSCKLTSKEVPGET 248
            DV+  T + +I +++NP  +   K+   W+ K  +  E NP C  P +C  + +      
Sbjct: 2353 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFA 2411

Query: 249  INLQTCXRCPVNYPW 293
             + + C  CP +YPW
Sbjct: 2412 HSFRMCGVCPKSYPW 2426


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
            F48E3.8b protein.
          Length = 1299

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +3

Query: 75   DVYFXTMTXVIQWVQNPRTVTEXKNFEPWREKCSV--EGNPACWVPHSCKLTSKEVPGET 248
            DV+  T + +I +++NP  +   K+   W+ K  +  E NP C  P +C  + +      
Sbjct: 1225 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFA 1283

Query: 249  INLQTCXRCPVNYPW 293
             + + C  CP +YPW
Sbjct: 1284 HSFRMCGVCPKSYPW 1298


>AC006709-1|AAF60432.2|  256|Caenorhabditis elegans Hypothetical
           protein Y119C1A.1 protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 123 PRTVTEXKNFEPWR-EKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCXRC 275
           PR++++  +  PW  ++CS E N   +  H C+L S+      I+   C  C
Sbjct: 198 PRSISQENSTGPWICDRCSRENNSNSYRCHHCQLPSRRFDPSEIDFCGCEYC 249


>AF101309-4|AAV58863.1|  669|Caenorhabditis elegans Hypothetical
           protein H24G06.1d protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +1

Query: 121 THVP*LXPRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 255
           TH P L PRT+SR   +APS++ L    +  +S  +RK  ++ S+
Sbjct: 104 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 146


>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
            protein H24G06.1b protein.
          Length = 1601

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +1

Query: 121  THVP*LXPRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 255
            TH P L PRT+SR   +APS++ L    +  +S  +RK  ++ S+
Sbjct: 1036 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 1078


>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
            protein H24G06.1a protein.
          Length = 1680

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +1

Query: 121  THVP*LXPRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 255
            TH P L PRT+SR   +APS++ L    +  +S  +RK  ++ S+
Sbjct: 1036 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 1078


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +3

Query: 72  NDVYFXTMTXVIQWVQNPRTV-----TEXKNFEPWREKCS 176
           +DV F  +  V   ++    V     T  KNFE W+EKCS
Sbjct: 3   SDVIFDEVVDVFNKIRRTSNVKSKQATFQKNFESWKEKCS 42


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 145  RTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 255
            + S+  + S PS E LH+ ++ P  ++ + F EKPS+
Sbjct: 2391 KLSTASKDSLPS-EALHSKWVPPQKNIVQLFAEKPSV 2426


>AL110479-7|CAB54355.1|  288|Caenorhabditis elegans Hypothetical
           protein Y105C5B.9 protein.
          Length = 288

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = +2

Query: 32  SFLVLDRRDPSKPQRRLLRYHDTSDP-----MGTKPTY 130
           SF+    +D S    R +R HDTS       +GT+PTY
Sbjct: 181 SFIPGSHKDTSSANYRFVRTHDTSGGALLKFIGTRPTY 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,913,496
Number of Sequences: 27780
Number of extensions: 217875
Number of successful extensions: 515
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)