Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30286
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.5  

>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +2

Query: 47  DRRDPSKPQRRLLRYHDTSDPMGTKPTYRD*XQELRAVERKVLRRRKPCMLG 202
           D R   K +  LLR  D+ D   +  TY        A    V  +   C+LG
Sbjct: 63  DGRVGGKRRNILLRRTDSMDSQNSASTYNSFLSSDSASSGNVYCKCDDCLLG 114


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 423 ALVTLPTIMYF 391
           AL+TLPTI +F
Sbjct: 327 ALITLPTIFWF 337


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 392 KYIIVGNVTKAIXSN 436
           KY ++GN TK I  N
Sbjct: 449 KYDLIGNGTKLIIKN 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,632
Number of Sequences: 438
Number of extensions: 2725
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)