Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30286
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138...    30   1.0  
At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138...    29   1.3  
At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase...    29   2.3  
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet...    28   3.1  
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    28   3.1  
At5g15740.1 68418.m01841 expressed protein contains Pfam PF03138...    28   4.1  
At2g16090.1 68415.m01845 zinc finger protein-related contains si...    28   4.1  
At3g02250.1 68416.m00206 expressed protein contains Pfam PF03138...    27   9.4  

>At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as ' axi
           1 protein from Nicotiana tabacum -related' based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 481

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 194 CRVSFDGALFSPRLEVLG 141
           CRV+F G  F+PR+E LG
Sbjct: 224 CRVNFQGLRFTPRIEALG 241


>At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 499

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 209 MRYPACRVSFDGALFSPRLEVLG 141
           +++  CRV+F G  F+P+LE LG
Sbjct: 222 LQWLRCRVNFQGLKFTPQLEALG 244


>At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 5 [Lycopersicon
           esculentum] GI:2459817; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 397

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = +3

Query: 24  FLEAFLYWIDEILQSHNDVYFXTMTXVIQWVQNPRTVTEX-KNF-EPWREKCSVEGNPAC 197
           F++ F   I  I+         T   V+ +  NP  + E  K F + W   C VE +   
Sbjct: 7   FVQVFSIVITIIMSHFGQFDARTSLNVLSFGANPNGIVESAKAFSDAWDAACGVEDSVVI 66

Query: 198 WVPHSCKLTSKEV 236
           +VP    L S EV
Sbjct: 67  YVPKGRYLVSGEV 79


>At5g27650.1 68418.m03313 PWWP domain-containing protein hypothetical
            protein F22F7.12 - Arabidopsis thaliana, EMBL:AC009606
          Length = 1072

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 198  WVPHSCKLTSKEVPGETINLQTCXRCPVNYPWXNDPTGDGH 320
            W+  +  L    +P   +NL++C + PV+ P  +   G+G+
Sbjct: 890  WLDQAPPLHQPTLPPPNVNLKSCLKKPVDDPSSSSNNGNGN 930


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +3

Query: 159 WREKCSVEGNPACWVPHSCKL---TSKEV-PGETINLQTCXRCPVNYPW-XNDPTGDGH 320
           W++KC  E     W+  + KL    SK +   +  NL TC +C  ++ W     TG  H
Sbjct: 260 WKKKCEDESETVNWITVNTKLCPKCSKPIQKRDGCNLMTC-KCGQHFCWLCGQATGRDH 317


>At5g15740.1 68418.m01841 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 508

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 194 CRVSFDGALFSPRLEVLG 141
           CRV+F+G  F+P++E LG
Sbjct: 243 CRVNFNGLKFTPQIEELG 260


>At2g16090.1 68415.m01845 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 593

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = +3

Query: 150 FEPWREKCSVEGNPACWVP-HS--CKLTSKEV-PGETINLQTCXRCPVNYPW-XNDPTGD 314
           +E WR+KC  E     W+  H+  C    K V      NL TC  C  ++ W   + TG 
Sbjct: 260 WELWRKKCFDESETVNWITVHTKPCPKCHKPVEKNGGCNLVTCL-CRQSFCWLCGEATGR 318

Query: 315 GHY*GAMISSPTC 353
            H   A IS  +C
Sbjct: 319 DHT-WARISGHSC 330


>At3g02250.1 68416.m00206 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 512

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 194 CRVSFDGALFSPRLEVLG 141
           CR +F+G  F+P++E LG
Sbjct: 243 CRANFNGLRFTPKIEELG 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,457,391
Number of Sequences: 28952
Number of extensions: 208701
Number of successful extensions: 481
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)