Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30285
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    27   2.2  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   2.9  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    26   3.8  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   6.7  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   8.9  

>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 443 NPAQVRLIKPPFVIENGVVFIVDNDIYTIFANGTSEKTD 327
           +P+QV  +     + NG V+ +D  +Y +  N T+ + D
Sbjct: 452 HPSQVGFVASSNTLSNGRVYYLDTRMYKVCLNFTTTQKD 490


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 321 TGRKTNSLSRRSHSNPIL 268
           +GR+  +L RR HS PIL
Sbjct: 695 SGRRARTLQRRRHSTPIL 712


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 336 LTCTVRKYSINVVIYNKNNTVFYDK 410
           ++ TV K+ I   +YN NN VF DK
Sbjct: 373 ISLTVLKHEIRTKLYNSNN-VFLDK 396


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 340 LVPFANIV*MSLSTIKTTPFSMT 408
           L PF +++  +LST+K TP S++
Sbjct: 148 LSPFTSLLPSTLSTLKDTPLSVS 170


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 193 HFWKRRLKIYSRSRPDHAADSE 128
           +F     +IY RS P H ADSE
Sbjct: 560 NFSTASFEIYERSIPTHGADSE 581


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -1

Query: 447 RKPSSGEANQT-TVCHR 400
           + PSSGEANQ  TVC R
Sbjct: 438 KAPSSGEANQLYTVCGR 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,823
Number of Sequences: 5004
Number of extensions: 41019
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)