Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30285
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   3.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   4.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   5.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.7  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 342 CTVRKYSINVVIYNKNN 392
           CT RK  I  V+YN +N
Sbjct: 71  CTTRKTRIIDVVYNASN 87


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 453 ANDFLHPIFGH 485
           +ND +HP++GH
Sbjct: 270 SNDKVHPLYGH 280


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 512 YGPDKKPKVVTENGVQEI 459
           YGP+K PKV  +    EI
Sbjct: 202 YGPEKGPKVPEKKKEDEI 219


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 432 LSWVFGKANDFLHPIFGHNFRL 497
           L W+    N F++  +  +FRL
Sbjct: 347 LGWINSAINPFIYAFYSADFRL 368


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 287 ATLIQYYAYNKNIYEYN 237
           ++L   Y YN N Y+YN
Sbjct: 316 SSLSNNYNYNNNNYKYN 332


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 504 RQKAESCDRKWG 469
           R + ++CDR WG
Sbjct: 114 RVRVDACDRLWG 125


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +3

Query: 336 LTCTVRKYSINVVIYNKNNTVFYDKRWFD*PHLSWVFGKAN 458
           LT      ++  + + K+N    D  W   PH++W    A+
Sbjct: 75  LTAVFLGLNLGFLAWAKHNPRGKDALWSLVPHMAWQLSTAH 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,679
Number of Sequences: 438
Number of extensions: 3052
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)